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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoN4EE_TR29319_c0_g2_i5
Scaffold_idBomo_Chr8
NCBI non-redundant
(nr)		replication_factor_C_(activator_1)_5_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000722 P telomere maintenance via recombination
GO:0003677 F DNA binding
GO:0003689 F DNA clamp loader activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005663 C DNA replication factor C complex
GO:0006260 P DNA replication
GO:0006261 P DNA-dependent DNA replication
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006296 P nucleotide-excision repair, DNA incision, 5'-to lesion
GO:0006297 P nucleotide-excision repair, DNA gap filling
GO:0019899 F enzyme binding
GO:0019985 P translesion synthesis
GO:0031390 C Ctf18 RFC-like complex
GO:0033683 P nucleotide-excision repair, DNA incision
GO:0042276 P error-prone translesion synthesis
GO:0042769 P obsolete DNA damage response, detection of DNA damage
GO:0043142 F single-stranded DNA helicase activity
GO:0070987 P error-free translesion synthesis
GO:1900264 P positive regulation of DNA-directed DNA polymerase activity
GO:1901796 P regulation of signal transduction by p53 class mediator
Transcript
Level		FPKM:52.41 TPM:69.82
ORF EntryO_BomoN4EE11330_complete:A_BomoN4EE_TR29319_c0_g2_i5
Sequence
(Nucleotide)
TTTAACTAAAATATTCATTTATTTATTTAAAAAAAATTGCATACAACTTTGTGACTTGAA
AAAGCACTTTTATAAATCAGAAGTACAAAACTAGCATTTCTTGTTCAATATTTTTACTCT
ATGAAAATTTGTGACCAAGTCAAGTTTCAACATGAGTATTTATAATAAAATGACTATAGC
CAAAACGTGAAGACATAAAAATACAAAATAAAGCAAAAATACTTTTAATAAATATGACTG
CACTGAGATATTTCATTGGCAGTACACTGGCAACATTATAAATGGCAAAATTTTGTACAA
GCAACACTTTTGGCACTTTGAGATTCCATTACAAGAAATTGTATACATTTTGAAAGCACT
TACACCTATAGACGTGTATATAATATTAAAAATATAGAGATTCATTCATAAAGGACGGAA
ATTAGGCGAATACAATGATCCTTTCTTTTGTTCTATAAACAATAAAGGTTACAAACTAAA
TCGTTAGATATGAAGACTTAGATTAATAAAATCATTACATAAATATTGCTTAAAGTAAAA
TGTATTTTATCGTCTTATGAATACAGTACGTAGTTTAGAAACTAAAATAACACGCTCTGA
TAGTAAGCCGAAGTGTAAATTCAAGTAGATTTTTTTTAAATCTAGTACTTCTACTCAGGG
TATTAGGCCAAAGTAATAAAATTATCGTATTGTCGTCGGTCCTTGATACGTACGTAAAAT
TATAAGTTAATCAAACGTCTTGAGTACTGGTGTAATTCACTACGTTGAAAGACTCCGCTT
GCTACATACGACACAGGTTAAGCTAAATGTGTATTAAAAACAGAAAAAAAAACTCATTTT
CCGCAAATGAAGTCTCTTATTTATTAGGTAAAAATAAAACGGCCCTGCAGACAATAATAA
GAAAATTAAGAATAAAATCAATATAATTATTCTCGTGTTTGTAGACGTTTCAAATTAAAT
AATTTTATTTCAAGTATATTTCCCTGTTTTGAGGATGGTTAATGACAAAAGATCATCGAC
CGAGTGAATGATATTGCTCAGTAGATCAACGGTCCGGATTTAGTTGTTCGGAACTTTTAT
ATAAGCAAGCTTATTTTGAAAATGTCGTAAGTGAGATTCACAGTTTGCATCAAAGATTTA
GCGTGTATTTATTACGACCAAAGGGACAGCTTCGTCAAATGTAAACATTTGAAATCAAAT
TAAATATCTATATTTTGATTTGGGCTAAACTGAAGCAATATCATGGCACTAAATACATTT
AGCAATTGTTGTACGAAAAATAAAAAACTTAATTCAAGTAAAAATTTTGAAAGGTTTTGG
TGAAAACTGTGTTGAAAACATGTTTTAAAAAAACAATTCACGTAGCTTCTGAGCATTAGT
AAGCTGTAGGTATTGCAAGTAAATTAAATACATTTTTAAGAATATCTTACTTAAACTATT
TACCTTATTTTCGCTAACCAAGAATTCAATTTATGTCAGCTATTTTTTTTTCTGTTCGCA
TAATTATAACCCTTATAACATTGTGCACTAAACTTAAAATGCTAAATCTTTCATTAGAAT
GAGTAGTCTTCAATTTTAAACATACCTCCTCTGGTATTTTCGAATACTCGCATTATCATT
TCAGATCTATTTAATATTTAGCAGCAAAAAAAATATGTGACTTCACTTATGGCAATACTT
CAACAATTGATCGGACAGTACAAAGATTTCTGAAAATACACGTTTTTTTTGGAGATTCTT
ATGGCCTGGTAACGAGTCCTTTAAGCCAAGTCTAATATTTTCCTCTTATATTCTATTATA
ACAAGAAGCTTCTATTATAACTTCTTGTTATGCGAAACGAGATGAAGTTGATCAATTTAA
GACTCTTCAATTGGGATGAAATTAAATGAATCGAGACGAGATAGCATTAAATAAAATCTT
AGTAAAACGGTGATTATTTACAGACATTTTCCTTTGACCTTTTGGAAGAATCCGAGAAGC
TACGTCCAAATGGCTTTGTTTATTTGTGTACTTTCACAGATGCTAAACAGTTAATAACCG
TCCTTTATTAGACGTTTAAGCCGGAAGAAAATTTAATTACAAAAATTAAACCTTGTAAAA
GTTCGTTTGTCGCGTTTCCGCCAAAAGTCGAGTCCTAATATATTAAGTGTATAATCTATG
AATAAAACTGCTACTACTATCTATGGTTCGAATTTTGAATTTTATAGTTTCCTCAAGCTT
GTAAACCAATCCACAATTTAAATAAATCGTTTTTATTAAAGTATCTGTACTTACATACTA
GAAGCGATTTAAAAATACTGTTATAAAAACAATATGACTGTTGGGGAAACAGGCCAAAAT
TTGCCATGGGTTGAAAAATATCGCCCAAAAAGATTGGATGATTTAGTATCTCATGATGAT
ATAATAAAAACAATAAATCAATTTATGAAAGAGAATCAGCTCCCACATCTACTATTCTAC
GGTCCTCCTGGAACCGGGAAGACATCTACCATTCTAGCCTGTGCCAAACAAATGTACACT
CCACAGCAATTTAGTTCGATGGTATGTAAATTTTTAGACCAGTTAATTAACAGCAAAATT
AAGAATCTGATTAGCATTTTTAAATAGTTGGTCATAAATATCGTAATTAAGTTACTTAGA
TTGCATCTAAGTAGCAATATAATTCAATAAGCAATATAATTCCTTATAAAATATAATTCC
TATCTGAAAAAATCTGTATTAAAGAACCTAAAATGATAGTTGCTTTAATGAAAATTTACT
GATTGCACAATACAAGGTGTACTAAAACCATTCCTGGAAATGAAGACAGGTTGCTGACTC
TTAAATTAAAGCATCATACCAACAAAATATTTTATTTATTTATTCAATGACAATAAAAAA
CTAATATGTGGTATTGGAGGTTTTTTTAAAATACAGAGGATGGCTATAAGCTTCTTTTAC
ATTGATTTTTTTGTTTACTGAAACAACAAGCATAGTTATAATATAGAATAGTTTATAGCA
TAGAATAGTTTGGTCCTAGTTTTGCTTTGGGTAAAGTTTTTACATCCTATATATTTATAC
ACTAAAAATCAACTTGGTTTCTTGTTTGCAATTATTGCATTGCTCTGGGATTTAGGAAAA
ATAAACTATTTAATGTAGTTTACATTCAGAGATAGGAATGGGAGATGTTTATCTGCTATT
TTCTTACTTACTGCTAGTAACCTCTAGGGGCTATACCAGCTACAGCAAAAGTGTAGGTGA
GTTCACAGAGCTTCATTTCAGAGACCTTGTTAACATCTACTCTAGCAAGAGCAGGGCTTA
GCTGAGTTACCCTCGAATAGTTGGTAGATTTCGTTATGCCTCCACGATTTCTACCTCGTT
GTACACCACCAGAGCGGTTGCTACGAAATCCAGCACCGCCTCCACGTCCTGTTCTTTTGT
TTGCATCAAATTTTCTTCCAGCACCACCTCCAATCCTTGTCTTTTTGTTGGCTTTTATAA
TATCATCCAGTGCCATTTCAATTTGATCAACCATGGTGATTATTTGAAATTCTAAATATT
TTTTCTATGAAAATTAAGTCAAAAACAAAAACAATCCTTTTAGAACTCTTCCTTCCCAAG
TAGACGGTGACAAAATGGCCGAAGAAAAGATTCGTTATTGCCAGATTGCTAATATTAGTT
CAACAGTAGATTGAAAAAAATTGTTGAGCTTTAAATTTGGTAGAAATTATAGTCAATAAA
GACTATCTTACACATCTGTCTTAGTTTATTTTATTTTACATTTACCAGTTGATTTGGTCA
AATCTTTCTGTTTAAAAAATTAAGCGCTTAGTTTTAATCTTTAACTAGGTAATCAAATCA
CGTAATGCTAATGCACTCAAAATTCAAATATTAAGAAGTGTATTATTTATGGTTCGAGAT
TTTTGGCGCGAGGAGTGAAGTTGTGTGTTTTGTTTTATTTTGTCTATTTAGTGTTTCTCC
AAGTTTAAATGTGTAATAACGGTGGTTTATAACCTG
(3996 bp)

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