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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoN4EE_TR29282_c0_g1_i7
Scaffold_idBomo_Chr11
NCBI non-redundant
(nr)		PREDICTED:_collagen_alpha-1(XVIII)_chain_isoform_X4_[Bombyx_mori]
Ontology
GO:0001525 P angiogenesis
GO:0005198 F structural molecule activity
GO:0005201 F extracellular matrix structural constituent
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005581 C collagen trimer
GO:0005582 C collagen type XV trimer
GO:0005604 C basement membrane
GO:0005615 C extracellular space
GO:0005788 C endoplasmic reticulum lumen
GO:0007155 P cell adhesion
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0016021 C integral component of membrane
GO:0030154 P cell differentiation
GO:0030574 P collagen catabolic process
GO:0031012 C extracellular matrix
GO:0070062 C extracellular exosome
Transcript
Level		FPKM:1.49 TPM:1.99
ORF EntryO_BomoN4EE11177_complete:A_BomoN4EE_TR29282_c0_g1_i7
Sequence
(Nucleotide)
GAACTGTGTGGGAGGTTAGTCCGTTACATGAATATCATGTTGCTACACTGTCATGCGCTA
TGATCGGAACGTTTCTTGAGTGGAAACAGTGACGCGTGCGTGTACTGACGCTCCACGTGA
TTTTGACAGTCGACCCGAGGTGCCGGTGTGTTTTTTTTTCTCGTATTTATCAGCGGTGCG
ATGCGCCCGACTTGAAGCGAAGGCGAAAGTGTTCTATTACGATAAGTCCACCTGAATGAA
TCCACGGTATCCAGCTGGGATGTTGTAATTTCTGGATTCGAAATAAGTTCGGCCAGATTT
TCGCCGGCCATGGAGAGTTTCCGATACATAAGTCTACCTCTTCTGCTGCTTGTAACTGCT
TGCCTCGCAACCGACGGACTCTTTGGCTCATCGATGTATCAAAATGATATACCAGAATAC
GATCTACTACACGCAATCGGAGTGCCCTTCAGCAACCCAAAGACCCAATATTTCGACGAG
GGTCTAGACGGATTTCCTGCTTATGGCCTAATGCCAGGGTCCGATATAAAATCGCCATAT
CGACTCTTCATGCCAGAGAAGCTTTACTCCGAATTTTCGATAACAGCAACAGTACGACCA
GCTAATAAAGATGGCGGATTCTTGTTCTCCGTTGTCAATCCTCTGGAGACTGTGGTTCAG
CTGGGAGTTCAGTTGATACCTTCAGGACCAGGACTGATGAACATATCCCTACTGTATACT
GATGCTAACATTTATGCGTTCTCGCAGACAATTGCTTCATTTGTAGTACCGACCTTCGCT
AAGAAGTGGAGCAGGTTCGCTTTGAAAGTGTCCTTGGAAAATGTGACACTTTACCTGAAC
TGCCACGAATTTGACACAGTGGTGGTAAGAAGGAACCCCCTGGAACTGGTCTTCGATTCA
GCGTCTACTCTCTACGTAGGACAGGCGGGGCCATTGATAAGGGGCGCTTTTCACGGCGCG
TTTCAAGAGCTGAAGCTATACGGATCGCCGTCACAAGCCGAGGTGCAATGTGTCAACACT
TTCGAGGAAATAGATAAAAGCGGCGAAGGAGACGAAATCGATATTGACAACTTCTTGGTG
GACCAGGAGGAAGACAGCGAGGGTTCAGGGAGATATGGAACGATACCGCCATTTCCGCCT
CCACCTCCGGGCTTAGATGGTTACTCTCTAAGACTTCGTGGAGATAAAGGAGAAAGAGGA
CCGAGGGGACCCCCAGGGGAATCAATCAGGGGTCCGCCAGGTCCTCCCGGGCCGCCCGGG
CCCCCCGGTCCTCCAGGGACCGCTACCGAGAGCTCTGGATCTGGTGATGATCAAATTTTC
GGGGAAAACTACGCTTCACTTGGACAATGCGGCTGTAATGCTAGCACTATCATGTCTTTG
CTACAAACTGCGCCTGAATTAAGGGGGCCACCTGGTCCCCCGGGGATGATCGGGGCAGAT
GGAAGGGCCGGTCCTCCTGGTATGCCGGGTCAGCCTGGTACTCCTGGTGAGCGTGGGCCC
GTAGGACCCCGCGGTGATAAAGGCGATCGTGGAGACGCCGGTACAAGAGGTCACGAAGGA
CAACCCGGCCCTAAAGGTGAAGCCGGTGTGGACGGACGACCTGGTACTGCTGGCCCTCCG
GGGCCTCCTGGACCACCAGGAACACCAGATTACAACAATTTCGAAGAATCTTTAATGGGA
GCATATGGAAGTGCTATCGGTAGACCTGGTGCTCCTGGGCCAAAAGGTGATTCGGGGCAA
CCTGGCCCAATGGGACCGCAGGGAGAAAGAGGATTCCCTGGACAAAAGGGAGAGAGAGGA
CAGATTGGTGCGGTAGGCGCCAAAGGGGATCGGGGTCATCCGGGACCTCAAGGCGATCGA
GGTGTTAAAGGTGATCGTGGAAACCCAGGATTCGACGGAAGACCAGGAATTCCTGGCGCC
AACGGACGTCCAGCAGATAAAGGCGAAAAGGGTGAACGTGGGGAGCCAGGACCTCCAGGG
TCACCGCCAGCTGGAGTTTTTAATGTTGCAGATCCAGAATTTATGGTTGCAGGGTCGCAA
GTGACAGGTGCTAAGGGTGACAAGGGAGAAAAGGGTGAAAAAGGAACTCGAGGTAATGAT
GGCCCACCAGGGTTCCCAGGGAAGGACGGGAAGCAAGGGGAACGAGGTGACATTGGACCT
TCAGGTCTACCAGGCATGGCCGGATCCCCTGGACCACAGGGCTTTAAGGGAGACCGAGGA
GAAAGAGGCCCTCCAGGACCTATCAGTGTTGCTTCAGCAGGGACCGATATCATAACTATT
AAGGGTGATAAAGGAGAACCAGGTGCCCGCGGGCGCAGGGGCCGCAGTGGGCCGGGGGGC
GCGCGGGGGGCCACGGGCGCCCCCGGACCGCCCGGGCCCGCCGGCCGCCCCGGGGACAAG
GGGGACACTGGACTACCCGGCTGGATGGGCCGTCCGGGAACCCTGGGCCCCCCAGGAGCA
CCAGGACCAGTTGGACCGAAAGGCGAAAAGGGCGACCCGGGAGTCAACATTTTGGACGTC
TCAATGTTCAAAGGTGAAAAAGGCGATCGGGGATTCGACGGAGTACCAGGAGTACAAGGT
CCACCCGGACCTCCAGGAAAACCAGCGTCCGAACCAGTGCAGTATCTTCCTGGGCCGCCT
GGCCCGCCCGGACCACCTGGTTCTCCCGGTACGCCTGGAGTATCTGTGGTGGGTCCTAAA
GGTGAACCAGGGGTCAGCTATTACGAAGAGGGACCTGTCCACGGCAGTCCTAAATTCTAC
GGGAGACCAGGGTTCAGCGCGCGGAGTCAACCGGCGGATGAATCCAGCGCGCAGAAGACG
GTTCCAGGGGCAGCCGTGTTCCAAACAACAGAAGAAATGATGAAGCTCGCCTCGTCCAGC
CCGGTGGGCGCGCTGGCGTATGTTGCAGAAGAACAAGCTTTGTTCGTCAAAGTTAATTCC
GGCTGGCAATATGTATTGCTTGGCTCTCTAGTGACTCAGTCGAAGCCTCCGCCGACGCCG
GCGCCAGCCCCCCTACCGATGCCAGCGGCGAGCCTAGTTCATGTACCGCCTATCTCTAAT
CTAGTCGAAAATTCACCAACACCAATCGGTCCTAGTCTTCGCATGGCCGCGCTCAACGAC
CCGCTATCGGGCAATATGCACGGCGTGCGCCGCGCGGACTACGCGTGCTACAGACAGGCG
CGCCGCGCGGGGCTGCGGGGGACCTTCCGAGCCTTCCTCACCAGCAGAATTCAGAATTTA
GATTCGACAGTGAGATACGCGGATCGTCACCTCCCTGTCCTGAATACTCAAGGAGACGTG
CTCTTCAAGTCATTCTCGGACATATTTGACGGGAGCGGAGGGATCGTGGCAGGGACCCCA
AGGATCTACAGTTTCAATGGGAAAAACATCATCACTGATTCGCATTGGCCTCAGAAGTTG
ATATGGCACGGATCTCACGCCAGCGGGGAGAGAGCCTTGGATACCTTCTGCGAGGAATGG
CAGAGTAACGATCCGACCAACAAGGGAATGGCGGCTTCACTATATTCGCACAAAATATTA
TCACAGGAGAGATACTCGTGTAACAATCATTTCGCCGTGCTGTGCATAGAGGCAACGTCA
AATGTCAGCGTACGAAGAAAAAGAGACACCCATAGATTTAATACTACAGAAGATTCAGAC
GAAGACTACGAGATGAGGCCGGACGAGTACGAAGAACTGATCAACGATATAATTGCTCAA
CCGCTTAGATACAATTAATTAGGCAGAAACAAACTGTTTTTTTTTAAATATCAAATTATT
CGAAAAAATCGATTAAAATCATTTAATATCGATTGAACTGCTTGTACTCTATAAAATATT
GCATCGTATTATTGCATTTATAAATTAAATATACGTAATGCTTAAACGAATGATTCATTC
GAGACTTCGAAATCTAAAATTTAGACTATGATCGTTAGTTTTTATTTTTGTTAAAAATGA
TAACGATTAATCAAGTTTACGTTTCACTCGAGACGATCAATAGTATATTTAACTAGCAAT
TACTTTCTAATACCAGATGATATCACACTCAGCCCTAGTCGGTAAATTATATATAATACG
TGATATCAAAATACTATGATACAGCTTAAAGGAATTGATTTAGATGCTTAAATGCCAAGA
GATTTTTTTTAATAGAATTGTGAAGCTTATGAGATTCCTATTAAAATAAGCTTAGCACGT
TTCTATTGTTATGAATTAAATGGAACATCGAAATTTTAAGTTGCAATATGAATAGTTGAA
CATTGTTCAAAATATACGTCACTTAATATGAATACAATACATAGGTATACATACAGTTAC
AATTACAAACATACAGTGCTCGCTAACTTGGCCGCTCTGAATTTCATGCAAACAGCTGCG
TGCATCGAAACGGATTGGTATTAATAAAAACAACAATAATCAGAAGCAAAAAAAGCTTTG
TTTGAGGGCCTAAAAAAATTCCCTTCGTAATTCTTCAAAATCAAAAATCAAAAAAAATTT
ACATAAATGAAATACATACTTGTTGAACGTCAAAAGAACTACCGCCGATTCACAAAAACT
AGCCTCCGTCCTGAGAAGAACTGGCA
(4586 bp)

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