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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoN4EE_TR29282_c0_g1_i6
Scaffold_idBomo_Chr11
NCBI non-redundant
(nr)		PREDICTED:_collagen_alpha-1(V)_chain_isoform_X5_[Bombyx_mori]
Ontology
GO:0001525 P angiogenesis
GO:0005198 F structural molecule activity
GO:0005201 F extracellular matrix structural constituent
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005581 C collagen trimer
GO:0005582 C collagen type XV trimer
GO:0005604 C basement membrane
GO:0005615 C extracellular space
GO:0005788 C endoplasmic reticulum lumen
GO:0007155 P cell adhesion
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0016021 C integral component of membrane
GO:0030154 P cell differentiation
GO:0030574 P collagen catabolic process
GO:0031012 C extracellular matrix
GO:0070062 C extracellular exosome
Transcript
Level		FPKM:1.70 TPM:2.26
ORF EntryO_BomoN4EE11175_complete:A_BomoN4EE_TR29282_c0_g1_i6
Sequence
(Nucleotide)
GCGGATCCGTTCGGTTAGCGCGTACGCATGCGTCCTTATTCCGGTTTTTAAAAGGGCAAC
GCACTTTACTTTTTTACTTGAATTTTATTTTATTATATAATAGCAGAATAACTTATATCT
GCCATTTATATTGTGCATATAAAAACGTATCATATCCGTATCACAATAATGACGGGAATT
TTGTTAATAAAAAATGTTATTCCAGTGATGTATGTTAGTTCAGAATTCGCCAATTGAAAG
AGCTGCTACATAAGTCGATTACAAAACCAATCGATATAATTCGAATAATCGAATCACCAT
TGCCTTTCTATTCGTCGAACATTAAGTTCGAATTTCAAATGCTCGAAGTGTCCTTCATAA
ACCGCCAGTCGAAATTTCGCTTTGTGTAAAATAAAATCACCTATATGCCTATGTGAGTTA
AGAGTGAGTTTTGCATGAACATGTCCGTCCGTGGTTTGTTGATCTTCGTTGTGGTGCAGG
GCGCGTTTCAAGAGCTGAAGCTATACGGATCGCCGTCACAAGCCGAGGTGCAATGTGTCA
ACACTTTCGAGGAAATAGATAAAAGCGGCGAAGGAGACGAAATCGATATTGACAACTTCT
TGGTGGACCAGGAGGAAGACAGCGAGGGTTCAGGGAGATATGGAACGATACCGCCATTTC
CGCCTCCACCTCCGGGCTTAGATGGTTACTCTCTAAGACTTCGTGGAGATAAAGGAGAAA
GAGGACCGAGGGGACCCCCAGGGGAATCAATCAGGGGTCCGCCAGGTCCTCCCGGGCCGC
CCGGGCCCCCCGGTCCTCCAGGGACCGCTACCGAGAGCTCTGGATCTGGTGATGATCAAA
TTTTCGGGGAAAACTACGCTTCACTTGGACAATGCGGCTGTAATGCTAGCACTATCATGT
CTTTGCTACAAACTGCGCCTGAATTAAGGGGGCCACCTGGTCCCCCGGGGATGATCGGGG
CAGATGGAAGGGCCGGTCCTCCTGGTATGCCGGGTCAGCCTGGTACTCCTGGTGAGCGTG
GGCCCGTAGGACCCCGCGGTGATAAAGGCGATCGTGGAGACGCCGGTACAAGAGGTCACG
AAGGACAACCCGGCCCTAAAGGTGAAGCCGGTGTGGACGGACGACCTGGTACTGCTGGCC
CTCCGGGGCCTCCTGGACCACCAGGAACACCAGATTACAACAATTTCGAAGAATCTTTAA
TGGGAGCATATGGAAGTGCTATCGGTAGACCTGGTGCTCCTGGGCCAAAAGGTGATTCGG
GGCAACCTGGCCCAATGGGACCGCAGGGAGAAAGAGGATTCCCTGGACAAAAGGGAGAGA
GAGGACAGATTGGTGCGGTAGGCGCCAAAGGGGATCGGGGTCATCCGGGACCTCAAGGCG
ATCGAGGTGTTAAAGGTGATCGTGGAAACCCAGGATTCGACGGAAGACCAGGAATTCCTG
GCGCCAACGGACGTCCAGCAGATAAAGGCGAAAAGGGTGAACGTGGGGAGCCAGGACCTC
CAGGGTCACCGCCAGCTGGAGTTTTTAATGTTGCAGATCCAGAATTTATGGTTGCAGGGT
CGCAAGTGACAGGTGCTAAGGGTGACAAGGGAGAAAAGGGTGAAAAAGGAACTCGAGGTA
ATGATGGCCCACCAGGGTTCCCAGGGAAGGACGGGAAGCAAGGGGAACGAGGTGACATTG
GACCTTCAGGTCTACCAGGCATGGCCGGATCCCCTGGACCACAGGGCTTTAAGGGAGACC
GAGGAGAAAGAGGCCCTCCAGGACCTATCAGTGTTGCTTCAGCAGGGACCGATATCATAA
CTATTAAGGGTGATAAAGGAGAACCAGGTGCCCGCGGGCGCAGGGGCCGCAGTGGGCCGG
GGGGCGCGCGGGGGGCCACGGGCGCCCCCGGACCGCCCGGGCCCGCCGGCCGCCCCGGGG
ACAAGGGGGACACTGGACTACCCGGCTGGATGGGCCGTCCGGGAACCCTGGGCCCCCCAG
GAGCACCAGGACCAGTTGGACCGAAAGGCGAAAAGGGCGACCCGGGAGTCAACATTTTGG
ACGTCTCAATGTTCAAAGGTGAAAAAGGCGATCGGGGATTCGACGGAGTACCAGGAGTAC
AAGGTCCACCCGGACCTCCAGGAAAACCAGCGTCCGAACCAGTGCAGTATCTTCCTGGGC
CGCCTGGCCCGCCCGGACCACCTGGTTCTCCCGGTACGCCTGGAGTATCTGTGGTGGGTC
CTAAAGGTGAACCAGGGGTCAGCTATTACGAAGAGGGACCTGTCCACGGCAGTCCTAAAT
TCTACGGGAGACCAGGGTTCAGCGCGCGGAGTCAACCGGCGGATGAATCCAGCGCGCAGA
AGACGGTTCCAGGGGCAGCCGTGTTCCAAACAACAGAAGAAATGATGAAGCTCGCCTCGT
CCAGCCCGGTGGGCGCGCTGGCGTATGTTGCAGAAGAACAAGCTTTGTTCGTCAAAGTTA
ATTCCGGCTGGCAATATGTATTGCTTGGCTCTCTAGTGACTCAGTCGAAGCCTCCGCCGA
CGCCGGCGCCAGCCCCCCTACCGATGCCAGCGGCGAGCCTAGTTCATGTACCGCCTATCT
CTAATCTAGTCGAAAATTCACCAACACCAATCGGTCCTAGTCTTCGCATGGCCGCGCTCA
ACGACCCGCTATCGGGCAATATGCACGGCGTGCGCCGCGCGGACTACGCGTGCTACAGAC
AGGCGCGCCGCGCGGGGCTGCGGGGGACCTTCCGAGCCTTCCTCACCAGCAGAATTCAGA
ATTTAGATTCGACAGTGAGATACGCGGATCGTCACCTCCCTGTCCTGAATACTCAAGGAG
ACGTGCTCTTCAAGTCATTCTCGGACATATTTGACGGGAGCGGAGGGATCGTGGCAGGGA
CCCCAAGGATCTACAGTTTCAATGGGAAAAACATCATCACTGATTCGCATTGGCCTCAGA
AGTTGATATGGCACGGATCTCACGCCAGCGGGGAGAGAGCCTTGGATACCTTCTGCGAGG
AATGGCAGAGTAACGATCCGACCAACAAGGGAATGGCGGCTTCACTATATTCGCACAAAA
TATTATCACAGGAGAGATACTCGTGTAACAATCATTTCGCCGTGCTGTGCATAGAGGCAA
CGTCAAATGTCAGCGTACGAAGAAAAAGAGACACCCATAGATTTAATACTACAGAAGATT
CAGACGAAGACTACGAGATGAGGCCGGACGAGTACGAAGAACTGATCAACGATATAATTG
CTCAACCGCTTAGATACAATTAATTAGGCAGAAACAAACTGTTTTTTTTTAAATATCAAA
TTATTCGAAAAAATCGATTAAAATCATTTAATATCGATTGAACTGCTTGTACTCTATAAA
ATATTGCATCGTATTATTGCATTTATAAATTAAATATACGTAATGCTTAAACGAATGATT
CATTCGAGACTTCGAAATCTAAAATTTAGACTATGATCGTTAGTTTTTATTTTTGTTAAA
AATGATAACGATTAATCAAGTTTACGTTTCACTCGAGACGATCAATAGTATATTTAACTA
GCAATTACTTTCTAATACCAGATGATATCACACTCAGCCCTAGTCGGTAAATTATATATA
ATACGTGATATCAAAATACTATGATACAGCTTAAAGGAATTGATTTAGATGCTTAAATGC
CAAGAGATTTTTTTTAATAGAATTGTGAAGCTTATGAGATTCCTATTAAAATAAGCTTAG
CACGTTTCTATTGTTATGAATTAAATGGAACATCGAAATTTTAAGTTGCAATATGAATAG
TTGAACATTGTTCAAAATATACGTCACTTAATATGAATACAATACATAGGTATACATACA
GTTACAATTACAAACATACAGTGCTCGCTAACTTGGCCGCTCTGAATTTCATGCAAACAG
CTGCGTGCATCGAAACGGATTGGTATTAATAAAAACAACAATAATCAGAAGCAAAAAAAG
CTTTGTTTGAGGGCCTAAAAAAATTCCCTTCGTAATTCTTCAAAATCAAAAATCAAAAAA
AATTTACATAAATGAAATACATACTTGTTGAACGTCAAAAGAACTACCGCCGATTCACAA
AAACTAGCCTCCGTCCTGAGAAGAACTGGCA
(4111 bp)

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