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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoN4EE_TR29282_c0_g1_i4
Scaffold_idBomo_Chr11
NCBI non-redundant
(nr)		PREDICTED:_collagen_alpha-1(V)_chain_isoform_X5_[Bombyx_mori]
Ontology
GO:0001525 P angiogenesis
GO:0005198 F structural molecule activity
GO:0005201 F extracellular matrix structural constituent
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005581 C collagen trimer
GO:0005582 C collagen type XV trimer
GO:0005604 C basement membrane
GO:0005615 C extracellular space
GO:0005788 C endoplasmic reticulum lumen
GO:0007155 P cell adhesion
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0016021 C integral component of membrane
GO:0030154 P cell differentiation
GO:0030574 P collagen catabolic process
GO:0031012 C extracellular matrix
GO:0070062 C extracellular exosome
Transcript
Level		FPKM:0.41 TPM:0.54
ORF EntryO_BomoN4EE11170_complete:A_BomoN4EE_TR29282_c0_g1_i4
Sequence
(Nucleotide)
GCGGATCCGTTCGGTTAGCGCGTACGCATGCGTCCTTATTCCGGTTTTTAAAAGGGCAAC
GCACTTTACTTTTTTACTTGAATTTTATTTTATTATATAATAGCAGAATAACTTATATCT
GCCATTTATATTGTGCATATAAAAACGTATCATATCCGTATCACAATAATGACGGGAATT
TTGTTAATAAAAAATGTTATTCCAGTGATGTATGTTAGTTCAGAATTCGCCAATTGAAAG
AGCTGCTACATAAGTCGATTACAAAACCAATCGATATAATTCGAATAATCGAATCACCAT
TGCCTTTCTATTCGTCGAACATTAAGTTCGAATTTCAAATGCTCGAAGTGTCCTTCATAA
ACCGCCAGTCGAAATTTCGCTTTGTGTAAAATAAAATCACCTATATGCCTATGTGAGTTA
AGAGTGAGTTTTGCATGAACATGTCCGTCCGTGGTTTGTTGATCTTCGTTGTGGTGCAGG
GCGCGTTTCAAGAGCTGAAGCTATACGGATCGCCGTCACAAGCCGAGGTGCAATGTGTCA
ACACTTTCGAGGAAATAGATAAAAGCGGCGAAGGAGACGAAATCGATATTGACAACTTCT
TGGTGGACCAGGAGGAAGACAGCGAGGGTTCAGGGAGATATGGAACGATACCGCCATTTC
CGCCTCCACCTCCGGGCTTAGATGGTTACTCTCTAAGACTTCGTGGAGATAAAGGAGAAA
GAGGACCGAGGGGACCCCCAGGGGAATCAATCAGGGGTCCGCCAGGTCCTCCCGGGCCGC
CCGGGCCCCCCGGTCCTCCAGGGACCGCTACCGAGAGCTCTGGATCTGGTGATGATCAAA
TTTTCGGGGAAAACTACGCTTCACTTGGACAATGCGGCTGTAATGCTAGCACTATCATGT
CTTTGCTACAAACTGCGCCTGAATTAAGGGGGCCACCTGGTCCCCCGGGGATGATCGGGG
CAGATGGAAGGGCCGGTCCTCCTGGTATGCCGGGTCAGCCTGGTACTCCTGGTGAGCGTG
GGCCCGTAGGACCCCGCGGTGATAAAGGCGATCGTGGAGACGCCGGTACAAGAGGTCACG
AAGGACAACCCGGCCCTAAAGGTGAAGCCGGTGTGGACGGACGACCTGGTACTGCTGGCC
CTCCGGGGCCTCCTGGACCACCAGGAACACCAGATTACAACAATTTCGAAGAATCTTTAA
TGGGAGCATATGGAAGTGCTATCGGTAGACCTGGTGCTCCTGGGCCAAAAGGTGATTCGG
GGCAACCTGGCCCAATGGGACCGCAGGGAGAAAGAGGATTCCCTGGACAAAAGGGAGAGA
GAGGACAGATTGGTGCGGTAGGCGCCAAAGGGGATCGGGGTCATCCGGGACCTCAAGGCG
ATCGAGGTGTTAAAGGTGATCGTGGAAACCCAGGATTCGACGGAAGACCAGGAATTCCTG
GCGCCAACGGACGTCCAGCAGATAAAGGCGAAAAGGGTGAACGTGGGGAGCCAGGACCTC
CAGGGTCACCGCCAGCTGGAGTTTTTAATGTTGCAGATCCAGAATTTATGGTTGCAGGGT
CGCAAGTGACAGGTGCTAAGGGTGACAAGGGAGAAAAGGTAAATATCAAAATACGAGTTT
ATTATTTTGTATGATGGTGGATGCACAGTAACGCCGTCTGCTATTTAATAGCTTCCGGAT
CCCATAGAGTCCAGGATACAAAGGTCGTTTCCCATATTAAGACTGATCAAAATGTCGTTT
GTAATGCACTAGTGACTGTCGTACCCTTCAAACTCCCAGCGCAGTAATTACTTGAAGTGT
TGAAATCTTCTGGTACCTGCTAATTACACCCGGACGAATAAGTAAAAGTAACTGTTACAC
AGACCACTAACTATATAAATATGTTAAAAGCAGGCTGCTAATCTTGATTACCCCTGATCA
CAATTGCTACACTCGCGAACATACTTTGGCCATTTAAACTACTTTTGCGGCTTAATCCCG
CTTATTTTTTAGGTGTCGGTAGGCATATTGTTTCCGACTTTTCCAATACTTTACAGTTTT
CACGATCACGGATGGATTAAGCCTAAAAAAATTTTTTAATTATTTTATGTCCACGTCTCA
CGAAATCGAACAAAATACTATGACACACTTTCAGTTGAGTTTCAGAAGTTCTTCCTAATC
GAGTGGAACTTGCCTTATCCTGTGCGCTGTCGTTTGAAAGAATCAGGCGTGCATGAACCC
ATTAACATAATGAAACGTTAGCTGCCATCGATATTTTTAGGGTGAAAAAGGAACTCGAGG
TAATGATGGCCCACCAGGGTTCCCAGGGAAGGACGGGAAGCAAGGGGAACGAGGTGACAT
TGGACCTTCAGGTCTACCAGGCATGGCCGGATCCCCTGGACCACAGGGCTTTAAGGGAGA
CCGAGGAGAAAGAGGCCCTCCAGGACCTATCAGTGTTGCTTCAGCAGGGACCGATATCAT
AACTATTAAGGGTGATAAAGGAGAACCAGGTGCCCGCGGGCGCAGGGGCCGCAGTGGGCC
GGGGGGCGCGCGGGGGGCCACGGGCGCCCCCGGACCGCCCGGGCCCGCCGGCCGCCCCGG
GGACAAGGGGGACACTGGACTACCCGGCTGGATGGGCCGTCCGGGAACCCTGGGCCCCCC
AGGAGCACCAGGACCAGTTGGACCGAAAGGCGAAAAGGGCGACCCGGGAGTCAACATTTT
GGACGTCTCAATGTTCAAAGGTGAAAAAGGCGATCGGGGATTCGACGGAGTACCAGGAGT
ACAAGGTCCACCCGGACCTCCAGGAAAACCAGCGTCCGAACCAGTGCAGTATCTTCCTGG
GCCGCCTGGCCCGCCCGGACCACCTGGTTCTCCCGGTACGCCTGGAGTATCTGTGGTGGG
TCCTAAAGGTGAACCAGGGGTCAGCTATTACGAAGAGGGACCTGTCCACGGCAGTCCTAA
ATTCTACGGGAGACCAGGGTTCAGCGCGCGGAGTCAACCGGCGGATGAATCCAGCGCGCA
GAAGACGGTTCCAGGGGCAGCCGTGTTCCAAACAACAGAAGAAATGATGAAGCTCGCCTC
GTCCAGCCCGGTGGGCGCGCTGGCGTATGTTGCAGAAGAACAAGCTTTGTTCGTCAAAGT
TAATTCCGGCTGGCAATATGTATTGCTTGGCTCTCTAGTGACTCAGTCGAAGCCTCCGCC
GACGCCGGCGCCAGCCCCCCTACCGATGCCAGCGGCGAGCCTAGTTCATGTACCGCCTAT
CTCTAATCTAGTCGAAAATTCACCAACACCAATCGGTCCTAGTCTTCGCATGGCCGCGCT
CAACGACCCGCTATCGGGCAATATGCACGGCGTGCGCCGCGCGGACTACGCGTGCTACAG
ACAGGCGCGCCGCGCGGGGCTGCGGGGGACCTTCCGAGCCTTCCTCACCAGCAGAATTCA
GAATTTAGATTCGACAGTGAGATACGCGGATCGTCACCTCCCTGTCCTGAATACTCAAGG
AGACGTGCTCTTCAAGTCATTCTCGGACATATTTGACGGGAGCGGAGGGATCGTGGCAGG
GACCCCAAGGATCTACAGTTTCAATGGGAAAAACATCATCACTGATTCGCATTGGCCTCA
GAAGTTGATATGGCACGGATCTCACGCCAGCGGGGAGAGAGCCTTGGATACCTTCTGCGA
GGAATGGCAGAGTAACGATCCGACCAACAAGGGAATGGCGGCTTCACTATATTCGCACAA
AATATTATCACAGGAGAGATACTCGTGTAACAATCATTTCGCCGTGCTGTGCATAGAGGC
AACGTCAAATGTCAGCGTACGAAGAAAAAGAGACACCCATAGATTTAATACTACAGAAGA
TTCAGACGAAGACTACGAGATGAGGCCGGACGAGTACGAAGAACTGATCAACGATATAAT
TGCTCAACCGCTTAGATACAATTAATTAGGCAGAAACAAACTGTTTTTTTTTAAATATCA
AATTATTCGAAAAAATCGATTAAAATCATTTAATATCGATTGAACTGCTTGTACTCTATA
AAATATTGCATCGTATTATTGCATTTATAAATTAAATATACGTAATGCTTAAACGAATGA
TTCATTCGAGACTTCGAAATCTAAAATTTAGACTATGATCGTTAGTTTTTATTTTTGTTA
AAAATGATAACGATTAATCAAGTTTACGTTTCACTCGAGACGATCAATAGTATATTTAAC
TAGCAATTACTTTCTAATACCAGATGATATCACACTCAGCCCTAGTCGGTAAATTATATA
TAATACGTGATATCAAAATACTATGATACAGCTTAAAGGAATTGATTTAGATGCTTAAAT
GCCAAGAGATTTTTTTTAATAGAATTGTGAAGCTTATGAGATTCCTATTAAAATAAGCTT
AGCACGTTTCTATTGTTATGAATTAAATGGAACATCGAAATTTTAAGTTGCAATATGAAT
AGTTGAACATTGTTCAAAATATACGTCACTTAATATGAATACAATACATAGGTATACATA
CAGTTACAATTACAAACATACAGTGCTCGCTAACTTGGCCGCTCTGAATTTCATGCAAAC
AGCTGCGTGCATCGAAACGGATTGGTATTAATAAAAACAACAATAATCAGAAGCAAAAAA
AGCTTTGTTTGAGGGCCTAAAAAAATTCCCTTCGTAATTCTTCAAAATCAAAAATCAAAA
AAAATTTACATAAATGAAATACATACTTGTTGAACGTCAAAAGAACTACCGCCGATTCAC
AAAAACTAGCCTCCGTCCTGAGAAGAACTGGCA
(4773 bp)

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