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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoN4EE_TR29282_c0_g1_i3
Scaffold_idBomo_Chr11
NCBI non-redundant
(nr)		PREDICTED:_collagen_alpha-1(XVIII)_chain_isoform_X2_[Bombyx_mori]
Ontology
GO:0001525 P angiogenesis
GO:0005198 F structural molecule activity
GO:0005201 F extracellular matrix structural constituent
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005581 C collagen trimer
GO:0005582 C collagen type XV trimer
GO:0005604 C basement membrane
GO:0005615 C extracellular space
GO:0005788 C endoplasmic reticulum lumen
GO:0007155 P cell adhesion
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0016021 C integral component of membrane
GO:0030154 P cell differentiation
GO:0030574 P collagen catabolic process
GO:0031012 C extracellular matrix
GO:0070062 C extracellular exosome
Transcript
Level		FPKM:0.46 TPM:0.61
ORF EntryO_BomoN4EE11167_complete:A_BomoN4EE_TR29282_c0_g1_i3
Sequence
(Nucleotide)
GAACTGTGTGGGAGGTTAGTCCGTTACATGAATATCATGTTGCTACACTGTCATGCGCTA
TGATCGGAACGTTTCTTGAGTGGAAACAGTGACGCGTGCGTGTACTGACGCTCCACGTGA
TTTTGACAGTCGACCCGAGGTGCCGGTGTGTTTTTTTTTCTCGTATTTATCAGCGGTGCG
ATGCGCCCGACTTGAAGCGAAGGCGAAAGTGTTCTATTACGATAAGTCCACCTGAATGAA
TCCACGGTATCCAGCTGGGATGTTGTAATTTCTGGATTCGAAATAAGTTCGGCCAGATTT
TCGCCGGCCATGGAGAGTTTCCGATACATAAGTCTACCTCTTCTGCTGCTTGTAACTGCT
TGCCTCGCAACCGACGGACTCTTTGGCTCATCGATGTATCAAAATGATATACCAGAATAC
GATCTACTACACGCAATCGGAGTGCCCTTCAGCAACCCAAAGACCCAATATTTCGACGAG
GGTCTAGACGGATTTCCTGCTTATGGCCTAATGCCAGGGTCCGATATAAAATCGCCATAT
CGACTCTTCATGCCAGAGAAGCTTTACTCCGAATTTTCGATAACAGCAACAGTACGACCA
GCTAATAAAGATGGCGGATTCTTGTTCTCCGTTGTCAATCCTCTGGAGACTGTGGTTCAG
CTGGGAGTTCAGTTGATACCTTCAGGACCAGGACTGATGAACATATCCCTACTGTATACT
GATGCTAACATTTATGCGTTCTCGCAGACAATTGCTTCATTTGTAGTACCGACCTTCGCT
AAGAAGTGGAGCAGGTTCGCTTTGAAAGTGTCCTTGGAAAATGTGACACTTTACCTGAAC
TGCCACGAATTTGACACAGTGGTGGTAAGAAGGAACCCCCTGGAACTGGTCTTCGATTCA
GCGTCTACTCTCTACGTAGGACAGGCGGGGCCATTGATAAGGGGCGCTTTTCACGGCGCG
TTTCAAGAGCTGAAGCTATACGGATCGCCGTCACAAGCCGAGGTGCAATGTGTCAACACT
TTCGAGGAAATAGATAAAAGCGGCGAAGGAGACGAAATCGATATTGACAACTTCTTGGTG
GACCAGGAGGAAGACAGCGAGGGTTCAGGGAGATATGGAACGATACCGCCATTTCCGCCT
CCACCTCCGGGCTTAGATGGTTACTCTCTAAGACTTCGTGGAGATAAAGGAGAAAGAGGA
CCGAGGGGACCCCCAGGGGAATCAATCAGGGGTCCGCCAGGTCCTCCCGGGCCGCCCGGG
CCCCCCGGTCCTCCAGGGACCGCTACCGAGAGCTCTGGATCTGGTGATGATCAAATTTTC
GGGGAAAACTACGCTTCACTTGGACAATGCGGCTGTAATGCTAGCACTATCATGTCTTTG
CTACAAACTGCGCCTGAATTAAGGGGGCCACCTGGTCCCCCGGGGATGATCGGGGCAGAT
GGAAGGGCCGGTCCTCCTGGTATGCCGGGTCAGCCTGGTACTCCTGGTGAGCGTGGGCCC
GTAGGACCCCGCGGTGATAAAGGCGATCGTGGAGACGCCGGTACAAGAGGTCACGAAGGA
CAACCCGGCCCTAAAGGTGAAGCCGGTGTGGACGGACGACCTGGTACTGCTGGCCCTCCG
GGGCCTCCTGGACCACCAGGAACACCAGATTACAACAATTTCGAAGAATCTTTAATGGGA
GCATATGGAAGTGCTATCGGTAGACCTGGTGCTCCTGGGCCAAAAGGTGATTCGGGGCAA
CCTGGCCCAATGGGACCGCAGGGAGAAAGAGGATTCCCTGGACAAAAGGGAGAGAGAGGA
CAGATTGGTGCGGTAGGCGCCAAAGGGGATCGGGGTCATCCGGGACCTCAAGGCGATCGA
GGTGTTAAAGGTGATCGTGGAAACCCAGGATTCGACGGAAGACCAGGAATTCCTGGCGCC
AACGGACGTCCAGCAGATAAAGGCGAAAAGGGTGAACGTGGGGAGCCAGGACCTCCAGGG
TCACCGCCAGCTGGAGTTTTTAATGTTGCAGATCCAGAATTTATGGTTGCAGGGTCGCAA
GTGACAGGTGCTAAGGGTGACAAGGGAGAAAAGGTAAATATCAAAATACGAGTTTATTAT
TTTGTATGATGGTGGATGCACAGTAACGCCGTCTGCTATTTAATAGCTTCCGGATCCCAT
AGAGTCCAGGATACAAAGGTCGTTTCCCATATTAAGACTGATCAAAATGTCGTTTGTAAT
GCACTAGTGACTGTCGTACCCTTCAAACTCCCAGCGCAGTAATTACTTGAAGTGTTGAAA
TCTTCTGGTACCTGCTAATTACACCCGGACGAATAAGTAAAAGTAACTGTTACACAGACC
ACTAACTATATAAATATGTTAAAAGCAGGCTGCTAATCTTGATTACCCCTGATCACAATT
GCTACACTCGCGAACATACTTTGGCCATTTAAACTACTTTTGCGGCTTAATCCCGCTTAT
TTTTTAGGTGTCGGTAGGCATATTGTTTCCGACTTTTCCAATACTTTACAGTTTTCACGA
TCACGGATGGATTAAGCCTAAAAAAATTTTTTAATTATTTTATGTCCACGTCTCACGAAA
TCGAACAAAATACTATGACACACTTTCAGTTGAGTTTCAGAAGTTCTTCCTAATCGAGTG
GAACTTGCCTTATCCTGTGCGCTGTCGTTTGAAAGAATCAGGCGTGCATGAACCCATTAA
CATAATGAAACGTTAGCTGCCATCGATATTTTTAGGGTGAAAAAGGAACTCGAGGTAATG
ATGGCCCACCAGGGTTCCCAGGGAAGGACGGGAAGCAAGGGGAACGAGGTGACATTGGAC
CTTCAGGTCTACCAGGCATGGCCGGATCCCCTGGACCACAGGGCTTTAAGGGAGACCGAG
GAGAAAGAGGCCCTCCAGGACCTATCAGTGTTGCTTCAGCAGGGACCGATATCATAACTA
TTAAGGGTGATAAAGGAGAACCAGGTGCCCGCGGGCGCAGGGGCCGCAGTGGGCCGGGGG
GCGCGCGGGGGGCCACGGGCGCCCCCGGACCGCCCGGGCCCGCCGGCCGCCCCGGGGACA
AGGGGGACACTGGACTACCCGGCTGGATGGGCCGTCCGGGAACCCTGGGCCCCCCAGGAG
CACCAGGACCAGTTGGACCGAAAGGCGAAAAGGGCGACCCGGGAGTCAACATTTTGGACG
TCTCAATGTTCAAAGGTGAAAAAGGCGATCGGGGATTCGACGGAGTACCAGGAGTACAAG
GTCCACCCGGACCTCCAGGAAAACCAGCGTCCGAACCAGTGCAGTATCTTCCTGGGCCGC
CTGGCCCGCCCGGACCACCTGGTTCTCCCGGTACGCCTGGAGTATCTGTGGTGGGTCCTA
AAGGTGAACCAGGGGTCAGCTATTACGAAGAGGGACCTGTCCACGGCAGTCCTAAATTCT
ACGGGAGACCAGGGTTCAGCGCGCGGAGTCAACCGGCGGATGAATCCAGCGCGCAGAAGA
CGGTTCCAGGGGCAGCCGTGTTCCAAACAACAGAAGAAATGATGAAGCTCGCCTCGTCCA
GCCCGGTGGGCGCGCTGGCGTATGTTGCAGAAGAACAAGCTTTGTTCGTCAAAGTTAATT
CCGGCTGGCAATATGTATTGCTTGGCTCTCTAGTGACTCAGTCGAAGCCTCCGCCGACGC
CGGCGCCAGCCCCCCTACCGATGCCAGCGGCGAGCCTAGTTCATGTACCGCCTATCTCTA
ATCTAGTCGAAAATTCACCAACACCAATCGGTCCTAGTCTTCGCATGGCCGCGCTCAACG
ACCCGCTATCGGGCAATATGCACGGCGTGCGCCGCGCGGACTACGCGTGCTACAGACAGG
CGCGCCGCGCGGGGCTGCGGGGGACCTTCCGAGCCTTCCTCACCAGCAGAATTCAGAATT
TAGATTCGACAGTGAGATACGCGGATCGTCACCTCCCTGTCCTGAATACTCAAGGAGACG
TGCTCTTCAAGTCATTCTCGGACATATTTGACGGGAGCGGAGGGATCGTGGCAGGGACCC
CAAGGATCTACAGTTTCAATGGGAAAAACATCATCACTGATTCGCATTGGCCTCAGAAGT
TGATATGGCACGGATCTCACGCCAGCGGGGAGAGAGCCTTGGATACCTTCTGCGAGGAAT
GGCAGAGTAACGATCCGACCAACAAGGGAATGGCGGCTTCACTATATTCGCACAAAATAT
TATCACAGGAGAGATACTCGTGTAACAATCATTTCGCCGTGCTGTGCATAGAGGCAACGT
CAAATGTCAGCGTACGAAGAAAAAGAGACACCCATAGATTTAATACTACAGAAGATTCAG
ACGAAGACTACGAGATGAGGCCGGACGAGTACGAAGAACTGATCAACGATATAATTGCTC
AACCGCTTAGATACAATTAATTAGGCAGAAACAAACTGTTTTTTTTTAAATATCAAATTA
TTCGAAAAAATCGATTAAAATCATTTAATATCGATTGAACTGCTTGTACTCTATAAAATA
TTGCATCGTATTATTGCATTTATAAATTAAATATACGTAATGCTTAAACGAATGATTCAT
TCGAGACTTCGAAATCTAAAATTTAGACTATGATCGTTAGTTTTTATTTTTGTTAAAAAT
GATAACGATTAATCAAGTTTACGTTTCACTCGAGACGATCAATAGTATATTTAACTAGCA
ATTACTTTCTAATACCAGATGATATCACACTCAGCCCTAGTCGGTAAATTATATATAATA
CGTGATATCAAAATACTATGATACAGCTTAAAGGAATTGATTTAGATGCTTAAATGCCAA
GAGATTTTTTTTAATAGAATTGTGAAGCTTATGAGATTCCTATTAAAATAAGCTTAGCAC
GTTTCTATTGTTATGAATTAAATGGAACATCGAAATTTTAAGTTGCAATATGAATAGTTG
AACATTGTTCAAAATATACGTCACTTAATATGAATACAATACATAGGTATACATACAGTT
ACAATTACAAACATACAGTGCTCGCTAACTTGGCCGCTCTGAATTTCATGCAAACAGCTG
CGTGCATCGAAACGGATTGGTATTAATAAAAACAACAATAATCAGAAGCAAAAAAAGCTT
TGTTTGAGGGCCTAAAAAAATTCCCTTCGTAATTCTTCAAAATCAAAAATCAAAAAAAAT
TTACATAAATGAAATACATACTTGTTGAACGTCAAAAGAACTACCGCCGATTCACAAAAA
CTAGCCTCCGTCCTGAGAAGAACTGGCA
(5248 bp)

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