SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoN4EE_TR29282_c0_g1_i2
Scaffold_idBomo_Chr11
NCBI non-redundant
(nr)		PREDICTED:_collagen_alpha-1(V)_chain_isoform_X5_[Bombyx_mori]
Ontology
GO:0001525 P angiogenesis
GO:0005198 F structural molecule activity
GO:0005201 F extracellular matrix structural constituent
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005581 C collagen trimer
GO:0005582 C collagen type XV trimer
GO:0005604 C basement membrane
GO:0005615 C extracellular space
GO:0005788 C endoplasmic reticulum lumen
GO:0007155 P cell adhesion
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0016021 C integral component of membrane
GO:0030154 P cell differentiation
GO:0030574 P collagen catabolic process
GO:0031012 C extracellular matrix
GO:0070062 C extracellular exosome
Transcript
Level		FPKM:5.10 TPM:6.80
ORF EntryO_BomoN4EE11164_complete:A_BomoN4EE_TR29282_c0_g1_i2
Sequence
(Nucleotide)
TGGAGTTGGAACGTTTGTCTACGTTTGCTGTTACGGGCGCTGTTCTATATTGCACTATAG
TATAGCGTAGTCTGAAAGCAGCTTAACGTTCTATAGGGTTCAGCGCGCGGAGTCAACCGG
CGGATGAATCCAGCGCGCAGAAGACGGTTCCAGGGGCAGCCGTGTTCCAAACAACAGAAG
AAATGATGAAGCTCGCCTCGTCCAGCCCGGTGGGCGCGCTGGCGTATGTTGCAGAAGAAC
AAGCTTTGTTCGTCAAAGTTAATTCCGGCTGGCAATATGTATTGCTTGGCTCTCTAGTGA
CTCAGTCGAAGCCTCCGCCGACGCCGGCGCCAGCCCCCCTACCGATGCCAGCGGCGAGCC
TAGTTCATGTACCGCCTATCTCTAATCTAGTCGAAAATTCACCAACACCAATCGGTCCTA
GTCTTCGCATGGCCGCGCTCAACGACCCGCTATCGGGCAATATGCACGGCGTGCGCCGCG
CGGACTACGCGTGCTACAGACAGGCGCGCCGCGCGGGGCTGCGGGGGACCTTCCGAGCCT
TCCTCACCAGCAGAATTCAGAATTTAGATTCGACAGTGAGATACGCGGATCGTCACCTCC
CTGTCCTGAATACTCAAGGAGACGTGCTCTTCAAGTCATTCTCGGACATATTTGACGGGA
GCGGAGGGATCGTGGCAGGGACCCCAAGGATCTACAGTTTCAATGGGAAAAACATCATCA
CTGATTCGCATTGGCCTCAGAAGTTGATATGGCACGGATCTCACGCCAGCGGGGAGAGAG
CCTTGGATACCTTCTGCGAGGAATGGCAGAGTAACGATCCGACCAACAAGGGAATGGCGG
CTTCACTATATTCGCACAAAATATTATCACAGGAGAGATACTCGTGTAACAATCATTTCG
CCGTGCTGTGCATAGAGGCAACGTCAAATGTCAGCGTACGAAGAAAAAGAGACACCCATA
GATTTAATACTACAGAAGATTCAGACGAAGACTACGAGATGAGGCCGGACGAGTACGAAG
AACTGATCAACGATATAATTGCTCAACCGCTTAGATACAATTAATTAGGCAGAAACAAAC
TGTTTTTTTTTAAATATCAAATTATTCGAAAAAATCGATTAAAATCATTTAATATCGATT
GAACTGCTTGTACTCTATAAAATATTGCATCGTATTATTGCATTTATAAATTAAATATAC
GTAATGCTTAAACGAATGATTCATTCGAGACTTCGAAATCTAAAATTTAGACTATGATCG
TTAGTTTTTATTTTTGTTAAAAATGATAACGATTAATCAAGTTTACGTTTCACTCGAGAC
GATCAATAGTATATTTAACTAGCAATTACTTTCTAATACCAGATGATATCACACTCAGCC
CTAGTCGGTAAATTATATATAATACGTGATATCAAAATACTATGATACAGCTTAAAGGAA
TTGATTTAGATGCTTAAATGCCAAGAGATTTTTTTTAATAGAATTGTGAAGCTTATGAGA
TTCCTATTAAAATAAGCTTAGCACGTTTCTATTGTTATGAATTAAATGGAACATCGAAAT
TTTAAGTTGCAATATGAATAGTTGAACATTGTTCAAAATATACGTCACTTAATATGAATA
CAATACATAGGTATACATACAGTTACAATTACAAACATACAGTGCTCGCTAACTTGGCCG
CTCTGAATTTCATGCAAACAGCTGCGTGCATCGAAACGGATTGGTATTAATAAAAACAAC
AATAATCAGAAGCAAAAAAAGCTTTGTTTGAGGGCCTAAAAAAATTCCCTTCGTAATTCT
TCAAAATCAAAAATCAAAAAAAATTTACATAAATGAAATACATACTTGTTGAACGTCAAA
AGAACTACCGCCGATTCACAAAAACTAGCCTCCGTCCTGAGAAGAACTGGCA
(1912 bp)

- SilkBase 1999-2023 -