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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoN4EE_TR29282_c0_g1_i1
Scaffold_idBomo_Chr11
NCBI non-redundant
(nr)		PREDICTED:_collagen_alpha-1(XVIII)_chain_isoform_X4_[Bombyx_mori]
Ontology
GO:0001525 P angiogenesis
GO:0005198 F structural molecule activity
GO:0005201 F extracellular matrix structural constituent
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005581 C collagen trimer
GO:0005582 C collagen type XV trimer
GO:0005604 C basement membrane
GO:0005615 C extracellular space
GO:0005788 C endoplasmic reticulum lumen
GO:0007155 P cell adhesion
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0016021 C integral component of membrane
GO:0030154 P cell differentiation
GO:0030574 P collagen catabolic process
GO:0031012 C extracellular matrix
GO:0070062 C extracellular exosome
Transcript
Level		FPKM:2.19 TPM:2.92
ORF EntryO_BomoN4EE11163_complete:A_BomoN4EE_TR29282_c0_g1_i1
Sequence
(Nucleotide)
GAACTGTGTGGGAGGTTAGTCCGTTACATGAATATCATGTTGCTACACTGTCATGCGCTA
TGATCGGAACGTTTCTTGAGTGGAAACAGTGACGCGTGCGTGTACTGACGCTCCACGTGA
TTTTGACAGTCGACCCGAGGTGCCGGTGTGTTTTTTTTTCTCGTATTTATCAGCGGTGCG
ATGCGCCCGACTTGAAGCGAAGGCGAAAGTGTTCTATTACGATAAGTCCACCTGAATGAA
TCCACGGTATCCAGCTGGGATGTTGTAATTTCTGGATTCGAAATAAGTTCGGCCAGATTT
TCGCCGGCCATGGAGAGTTTCCGATACATAAGTCTACCTCTTCTGCTGCTTGTAACTGCT
TGCCTCGCAACCGACGGACTCTTTGGCTCATCGATGTATCAAAATGGTGAGCCTTTTATA
GATATACCAGAATACGATCTACTACACGCAATCGGAGTGCCCTTCAGCAACCCAAAGACC
CAATATTTCGACGAGGGTCTAGACGGATTTCCTGCTTATGGCCTAATGCCAGGGTCCGAT
ATAAAATCGCCATATCGACTCTTCATGCCAGAGAAGCTTTACTCCGAATTTTCGATAACA
GCAACAGTACGACCAGCTAATAAAGATGGCGGATTCTTGTTCTCCGTTGTCAATCCTCTG
GAGACTGTGGTTCAGCTGGGAGTTCAGTTGATACCTTCAGGACCAGGACTGATGAACATA
TCCCTACTGTATACTGATGCTAACATTTATGCGTTCTCGCAGACAATTGCTTCATTTGTA
GTACCGACCTTCGCTAAGAAGTGGAGCAGGTTCGCTTTGAAAGTGTCCTTGGAAAATGTG
ACACTTTACCTGAACTGCCACGAATTTGACACAGTGGTGGTAAGAAGGAACCCCCTGGAA
CTGGTCTTCGATTCAGCGTCTACTCTCTACGTAGGACAGGCGGGGCCATTGATAAGGGGC
GCTTTTCACGGCGCGTTTCAAGAGCTGAAGCTATACGGATCGCCGTCACAAGCCGAGGTG
CAATGTGTCAACACTTTCGAGGAAATAGATAAAAGCGGCGAAGGAGACGAAATCGATATT
GACAACTTCTTGGTGGACCAGGAGGAAGACAGCGAGGGTTCAGGGAGATATGGAACGATA
CCGCCATTTCCGCCTCCACCTCCGGGCTTAGATGGTTACTCTCTAAGACTTCGTGGAGAT
AAAGGAGAAAGAGGACCGAGGGGACCCCCAGGGGAATCAATCAGGGGTCCGCCAGGTCCT
CCCGGGCCGCCCGGGCCCCCCGGTCCTCCAGGGACCGCTACCGAGAGCTCTGGATCTGGT
GATGATCAAATTTTCGGGGAAAACTACGCTTCACTTGGACAATGCGGCTGTAATGCTAGC
ACTATCATGTCTTTGCTACAAACTGCGCCTGAATTAAGGGGGCCACCTGGTCCCCCGGGG
ATGATCGGGGCAGATGGAAGGGCCGGTCCTCCTGGTATGCCGGGTCAGCCTGGTACTCCT
GGTGAGCGTGGGCCCGTAGGACCCCGCGGTGATAAAGGCGATCGTGGAGACGCCGGTACA
AGAGGTCACGAAGGACAACCCGGCCCTAAAGGTGAAGCCGGTGTGGACGGACGACCTGGT
ACTGCTGGCCCTCCGGGGCCTCCTGGACCACCAGGAACACCAGATTACAACAATTTCGAA
GAATCTTTAATGGGAGCATATGGAAGTGCTATCGGTAGACCTGGTGCTCCTGGGCCAAAA
GGTGATTCGGGGCAACCTGGCCCAATGGGACCGCAGGGAGAAAGAGGATTCCCTGGACAA
AAGGGAGAGAGAGGACAGATTGGTGCGGTAGGCGCCAAAGGGGATCGGGGTCATCCGGGA
CCTCAAGGCGATCGAGGTGTTAAAGGTGATCGTGGAAACCCAGGATTCGACGGAAGACCA
GGAATTCCTGGCGCCAACGGACGTCCAGCAGATAAAGGCGAAAAGGGTGAACGTGGGGAG
CCAGGACCTCCAGGGTCACCGCCAGCTGGAGTTTTTAATGTTGCAGATCCAGAATTTATG
GTTGCAGGGTCGCAAGTGACAGGTGCTAAGGGTGACAAGGGAGAAAAGGGTGAAAAAGGA
ACTCGAGGTAATGATGGCCCACCAGGGTTCCCAGGGAAGGACGGGAAGCAAGGGGAACGA
GGTGACATTGGACCTTCAGGTCTACCAGGCATGGCCGGATCCCCTGGACCACAGGGCTTT
AAGGGAGACCGAGGAGAAAGAGGCCCTCCAGGACCTATCAGTGTTGCTTCAGCAGGGACC
GATATCATAACTATTAAGGGTGATAAAGGAGAACCAGGTGCCCGCGGGCGCAGGGGCCGC
AGTGGGCCGGGGGGCGCGCGGGGGGCCACGGGCGCCCCCGGACCGCCCGGGCCCGCCGGC
CGCCCCGGGGACAAGGGGGACACTGGACTACCCGGCTGGATGGGCCGTCCGGGAACCCTG
GGCCCCCCAGGAGCACCAGGACCAGTTGGACCGAAAGGCGAAAAGGGCGACCCGGGAGTC
AACATTTTGGACGTCTCAATGTTCAAAGGTGAAAAAGGCGATCGGGGATTCGACGGAGTA
CCAGGAGTACAAGGTCCACCCGGACCTCCAGGAAAACCAGCGTCCGAACCAGTGCAGTAT
CTTCCTGGGCCGCCTGGCCCGCCCGGACCACCTGGTTCTCCCGGTACGCCTGGAGTATCT
GTGGTGGGTCCTAAAGGTGAACCAGGGGTCAGCTATTACGAAGAGGGACCTGTCCACGGC
AGTCCTAAATTCTACGGGAGACCAGGGTTCAGCGCGCGGAGTCAACCGGCGGATGAATCC
AGCGCGCAGAAGACGGTTCCAGGGGCAGCCGTGTTCCAAACAACAGAAGAAATGATGAAG
CTCGCCTCGTCCAGCCCGGTGGGCGCGCTGGCGTATGTTGCAGAAGAACAAGCTTTGTTC
GTCAAAGTTAATTCCGGCTGGCAATATGTATTGCTTGGCTCTCTAGTGACTCAGTCGAAG
CCTCCGCCGACGCCGGCGCCAGCCCCCCTACCGATGCCAGCGGCGAGCCTAGTTCATGTA
CCGCCTATCTCTAATCTAGTCGAAAATTCACCAACACCAATCGGTCCTAGTCTTCGCATG
GCCGCGCTCAACGACCCGCTATCGGGCAATATGCACGGCGTGCGCCGCGCGGACTACGCG
TGCTACAGACAGGCGCGCCGCGCGGGGCTGCGGGGGACCTTCCGAGCCTTCCTCACCAGC
AGAATTCAGAATTTAGATTCGACAGTGAGATACGCGGATCGTCACCTCCCTGTCCTGAAT
ACTCAAGGAGACGTGCTCTTCAAGTCATTCTCGGACATATTTGACGGGAGCGGAGGGATC
GTGGCAGGGACCCCAAGGATCTACAGTTTCAATGGGAAAAACATCATCACTGATTCGCAT
TGGCCTCAGAAGTTGATATGGCACGGATCTCACGCCAGCGGGGAGAGAGCCTTGGATACC
TTCTGCGAGGAATGGCAGAGTAACGATCCGACCAACAAGGGAATGGCGGCTTCACTATAT
TCGCACAAAATATTATCACAGGAGAGATACTCGTGTAACAATCATTTCGCCGTGCTGTGC
ATAGAGGCAACGTCAAATGTCAGCGTACGAAGAAAAAGAGACACCCATAGATTTAATACT
ACAGAAGATTCAGACGAAGACTACGAGATGAGGCCGGACGAGTACGAAGAACTGATCAAC
GATATAATTGCTCAACCGCTTAGATACAATTAATTAGGCAGAAACAAACTGTTTTTTTTT
AAATATCAAATTATTCGAAAAAATCGATTAAAATCATTTAATATCGATTGAACTGCTTGT
ACTCTATAAAATATTGCATCGTATTATTGCATTTATAAATTAAATATACGTAATGCTTAA
ACGAATGATTCATTCGAGACTTCGAAATCTAAAATTTAGACTATGATCGTTAGTTTTTAT
TTTTGTTAAAAATGATAACGATTAATCAAGTTTACGTTTCACTCGAGACGATCAATAGTA
TATTTAACTAGCAATTACTTTCTAATACCAGATGATATCACACTCAGCCCTAGTCGGTAA
ATTATATATAATACGTGATATCAAAATACTATGATACAGCTTAAAGGAATTGATTTAGAT
GCTTAAATGCCAAGAGATTTTTTTTAATAGAATTGTGAAGCTTATGAGATTCCTATTAAA
ATAAGCTTAGCACGTTTCTATTGTTATGAATTAAATGGAACATCGAAATTTTAAGTTGCA
ATATGAATAGTTGAACATTGTTCAAAATATACGTCACTTAATATGAATACAATACATAGG
TATACATACAGTTACAATTACAAACATACAGTGCTCGCTAACTTGGCCGCTCTGAATTTC
ATGCAAACAGCTGCGTGCATCGAAACGGATTGGTATTAATAAAAACAACAATAATCAGAA
GCAAAAAAAGCTTTGTTTGAGGGCCTAAAAAAATTCCCTTCGTAATTCTTCAAAATCAAA
AATCAAAAAAAATTTACATAAATGAAATACATACTTGTTGAACGTCAAAAGAACTACCGC
CGATTCACAAAAACTAGCCTCCGTCCTGAGAAGAACTGGCA
(4601 bp)

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