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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoN4EE_TR29190_c0_g1_i1
Scaffold_idBomo_Chr21
NCBI non-redundant
(nr)		PREDICTED:_E3_ubiquitin-protein_ligase_RNF126-B_isoform_X1_[Amyelois_transitella]
Ontology
GO:0000209 P protein polyubiquitination
GO:0005154 F epidermal growth factor receptor binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006513 P protein monoubiquitination
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042059 P negative regulation of epidermal growth factor receptor signaling pathway
GO:0042127 P regulation of cell population proliferation
GO:0042147 P retrograde transport, endosome to Golgi
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043162 P ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
GO:0070534 P protein K63-linked ubiquitination
GO:0070936 P protein K48-linked ubiquitination
GO:0071629 P cytoplasm protein quality control by the ubiquitin-proteasome system
Transcript
Level		FPKM:17.56 TPM:23.39
ORF EntryO_BomoN4EE10903_complete:A_BomoN4EE_TR29190_c0_g1_i1
Sequence
(Nucleotide)
GCCCGTACCATAAACATTTTTTTTTTTGTACAATGTTTCCTTATTAGGAAAGGCAAGGGG
ATCTAAAGTACATTAAACAATGTTAATAGGCAGCTGACAGACTCCGGACTGCGAGCACTA
AAACAACACCACATACGTAATTTGATTGTTGGATTAATAGTATCGATCGATAGGCCTCAG
TTCTGAAGTGTGACAATTCAAAAAAATATGTTCTTGTCACAGTTGAGAAATTAAATAGCA
TGATAGTTTGATCTGTGCGTTTCAATGTTTCAATGTATTTCAATTTTAATTTCAATATTT
CATTTCACTTAATATTAATTTTAGAAAAATATTGTCTTTTTAAATCATTCATTTAATTTT
TTTTCATTGATGACAGCCGCAACGTAGAACCTTTCTTTTAAAGTCTAGTTTCTCTTATAA
TGAATAATATCCCATATTTATCTTAATTGCTGTATAACTAACTGTTTAAGATACTTGTTA
CTCTGCAGAGCTGAGGTATCGGTTAATGTATATGTTATTAAATAATAAACAGCAAAATTC
AATTAATAAATTTTGTATTTTGTTTCATTTTATTATTACAAATATGATTATTGCTTTTTG
TACGCATCAATACTTCATTACGATGGTGTTCTCAAACCGCATTTCAAAAAATAAAATATT
TACATAACCATGTATTAGAGAAATTAAAATAATCATTAAAATTTTCATAAAGCTAACGCT
TAATGTTCAGTTATTTTAAAATTTTATGTATTAATATTTATTTATTTATTTTACACAATC
CATAATAACAATACTTTACAAAACACAAACAAAAATTATATACTAGAGTCAAAGTTTCAA
CCGTTTTTTTAATACATTTACAATTCATGTTACTTCAGCATTAAAGGCCCTAACTTACGA
TGCATATTTACATAATTTACATGACAAAAAGATTACTAAAAATAAAAACAATTGAACCAT
GACTCTTCTACATACAATTTCATTTATAACGTGAAACGCGTGTTTACGAAATCACAAACA
ATTCAATAATTTAAGCTCAGCTTGAAAATCTCACAATTTTTATTTATTAGCTTACACGGG
TGACAAGCTCAGGACCCACCTGATGGTAAGTGGTTACCAGAAGCCATAGATATTACAACG
TAAACGCCGCCAACCAACTTTAGATGTGAGGTCTAATTCTCAATTGTGCTGCATAACACT
TTCTCAAACCTTCAAACCGGTATACATTACTGCTTCACAGCAGAATTAGGCAGAACAGTA
ATATCTGCCCAGGCGGGCTTACATTACGCACTACCACCAGTAAAACATTAACATTAATTC
ACTATACAGAATATAGATCGTTTAGATCTGTCAGTCATAAAAAAATATTTAGCACACAAT
CTTAACACAACAAGTCCACGTCAGTTATATTCAACCCCAACTATTACATTACATTAAACT
AGTTACATTTAATATAGTATAACAATTTCATTAACTATTCTATTTATAACATTTTTATTG
ACACAATTTCGATAATCACAATTGACTGACGTGGAAAACCTCAAAATGTCGATTTCAACA
AACCTGTATCAAATCGACACAGGTTATAAACTCATTAGTTATGTGCACTGTGAGATTTTC
ACACCGAGAGTTGTCCCACACTACGCCACACACATATAGTAGTGTCAATAACGTCACAGA
TGAAAGGCACGATTCCCAACATTCACAGGATCCACTACGGCAAACACTAGAGATCAGCTC
GGCGTCACCGTGAGCACACAACGACTAGTTCACACCGACTCACACTCGCGCACAGTACGT
CTCATCGCGTTCGCCGCATCGGCATCGACAGTTCACGTGACAATCGCGTCGTTTTCGATC
ATAACAATACATATCTTCTGCGGCACGAACGACGCCACGGCCGAGCCTGCAGTTAGTCGT
AGTCGATGTCCATGTTGTACCGGTCCGAGCCGAGCGACGACGACGAGGTGTCGGGCCAGC
CGGAGCCCGACGAGCCCGAGTCGAAGCCCGACAGCGTCACGTGCGCGCCCGTCGCCTGCA
TCATCTGCTGCAGCGCCGCCGCGAAACCAGACCGAGCATTTATTGAAGCTATTGACGGAG
TACTACTGGCCGTAGAGGTGGGCGGTTGCGTGGGCGGTAGCGGCGGTTGCTGGGTCGTGG
CGGTGGCTGTGGTGTCTGTGGTGGTGCTTGTGGTATTGGTGATGGCTTCAGTATCGGCAG
GCGGAGGGTCTGCTGGGAGCAGCGAGCGCCGACAGATGGGACAGGTAGCGTGTAGCTGCA
GCCACGGGGAGATACACGACGAGTGGAACAGATGCTCACATTCTAAGCGCGATACTGTCT
CGCCTGTCTCAAAATTTTCCCAGCAAACTGAACAAGCAGTCCCTTTAGCAGCATGATCCT
CCGTGAGTATCTCCTGTGGTAATGCGGCTAGCTGATCCCGTGGTAGAGGAGGAGGCCCTG
AGTTCTCCAACTGGCCTAGAAGTTGTGTTACTACTGCGTCTAAGCCTTCTCCTCCGAAAA
CATAGTCTCCAGGTGCTCCGACAAGTACAAATGGTGCACCAGCAGTTGTAGCACCAGTGC
CCGGCCTCCCGGCTCCCATCATCCAGAGTAACTGTTCGAGGATTGTATCTCTTCTACCTG
TGTTTCGGTACCGACCTCCCGTCATCAGGAATGCTAAATCGTTAAGCATTGGTGGTGGTG
CCTGGCGATCATCGTCCAAGTTGCTCATATCTGCATCGTCAAAATCACCATCCGCTTCAC
TCTCCAATTGCTCTATAAAACCACTAGCACAATATGGGCATGTGTAATCCTGCAAAACAT
CTTCAAATTCTATATCACACCTGTGGCAGAAAAACCGTAGTGTTGGTCTTCGTTCTACCA
TTGCGTCAGCCATGTTAAATTAATTAATACAACTGCACCAATAAATACTTATTATTTAAA
CTCAATTCCTAAAGATTGTGCTTTAAATTTTCAACAAAAATTTAACAATCGCCATTTTTT
TGAGCATTCACAATCTATGGATTTTTTAAATTAAGCCACAGATTATGTTCATGTCGTAAC
CCCTCACCATAGCTGGTTTTATTTATTCATTTTACTGGGCTAGCAAATGGAACAAAGCCC
AAACTATTTTCCCTATTTTCGAAATGAAGAACAGGTTCTCTTCAAAATCCAAGTAAAATT
GTGTAGTCAAG
(3191 bp)

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