SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoN4EE_TR29170_c0_g2_i1
Scaffold_idBomo_Chr17
NCBI non-redundant
(nr)		PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_nonstop_[Papilio_machaon]
Ontology
GO:0000124 C SAGA complex
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006325 P chromatin organization
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007411 P axon guidance
GO:0007412 P axon target recognition
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0008347 P glial cell migration
GO:0016568 P chromatin organization
GO:0016578 P histone deubiquitination
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0021782 P glial cell development
GO:0036459 F thiol-dependent deubiquitinase
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0071819 C DUBm complex
Transcript
Level		FPKM:15.62 TPM:20.80
ORF EntryO_BomoN4EE10884_complete:A_BomoN4EE_TR29170_c0_g2_i1
Sequence
(Nucleotide)
AAATTAAAATAAGACATGACTTAAAGGTCTTAGTTACCAGGTCATAAAATCCCTTAAAAG
AAAACACACACACACCCCGCGCCCCGTTCACAGCTTAGAGTCAAATAATTTCATTCAAGT
CAGCTTCAGCAGCATAGATAATATACCTCCTGATATACCGATCAGCAGTCAGATTCGATT
TCTTGGTTCAGAATTTTAAATTTTCATTTAATTGCTTGTTTTCAGTATTAATGTTTTGTT
ATTTTTATTTTGGTTACCGACCGTCATTATCTTATTATGCTTTCATTCTAATTTCTGTCA
GCGAGATATCTTTGTAACCGGTGAATTTACAAGCCAAAATAATGAATGACAATGGTTGCA
TACACCTAAATAATTTTAAGGCTGCTAAAGGCACTAACCCATATAAAATCGTACATGCAT
TTTTTGTTTCCTGTACGTCGTATGAAGCACGGAGATACAAGGCAACATCCTGTCTCTGCT
TTGCTTGTGGCCAGCCTGGACCTCGTATGCATTCATGTCTCCACTGTATCTACTTTGCAT
GCTATGCTGGTCATATTCAAGAACACTCCAAATCTAAGAAACACTTCCTGTATGTTGACC
TTAGCTATGGAAATGTCTTCTGTGCTCAATGCCAAGACTACATTTATGATAGGGAGCTTA
CTGAGATCGCTGCAATACATAAGGCAAAGGAGGCTAAGTCCCTTGGTATAAGCATACCTT
TTATGCCATGGTTACCAAACCATAATGAAGCAATGGCTCTTCGTCGCCTACGTAAACGGC
GCCTTATCAGTCCTCATACTACAATAGGTTTACGGGGCTTACAGAACCTAGGATCAACAT
GCTTCATGAACTGCATTGTTCAGACACTAATTCACACTCCACTCCTGAGAGATTATTTCT
TAGCAGAAAAACACAAATGTAAGTCGCAAAGTTCTAGCAAATGCTTGGTGTGTGAAGTTT
CCAAACTATTTCAGGAGTTTTACTCTGGAGCAAAAACACCGCTGACTTTGCATCGTCTAT
TACACTTAATATGGACTCACGCCCGTCACTTGGCTGGATATGAACAACAGGATGCTCATG
AATTCTTCATTGCCACTCTTGATGTGCTGCATAGACATTGCATGAATGGAGTAGAAGATA
CAGAAAAAAAGGAAAATGGGCGTTGTAATTGCATTATCGATCAGATATTCACCGGCGGAT
TACAAAGCGACGTCGTGTGCACCTCCTGCTCTGGAGTCTCCACTACCATCGATCCGTTCT
GGGACATCAGTCTTGACGTGGCCGGGCCGGGTTCCCTGCAAGCTTGCTTGGAACGTTTCA
CCAGAGCCGAACACCTGGGCTCGGCGGCGAAAATAAAATGCTCCAACTGTCGCGCCTACC
GTGAATCCACCAAGCAGCTGACTTTAGAGACTTTGCCGATCGTAGCGAGCTTCCACCTCA
AACGTTTCGAGCATTCGTCTCAGATCGATCGGAAGATATCCGCCTTCGTATCGTTCCCGG
CTGAGTTAGACATGACTCCGTTTATGTCGTCGCATCGTCGTGCCGTCGACGTGGGCGCGG
CCGAGAACAATAACACCCCGGAAGGAATGTTCGAGGACAACCGCTACTCTCTGTTCGCGG
TGGTCAATCACTTGGGTTCGCTGGACGCAGGGCACTACACCGCATACGTCAGGCAAATGA
AAGGAAGCTGGTTCAAATGCGACGACCACATGATTACTAGGGCGTCACTTCGAGAGGTTT
TAGATAGCGAAGGATATCTTCTGTTTTATCACAAGACTGTGTTGGAGTATGAATGCGACG
TTTCTTAAAAGCTTTTGTTAGGGAGCTTATTATTACTATTATTCTAAATCATGTATCTGT
CTGATGGTTACGCAGTGTATCCATCGTTTCTTTGACGTTATTGTACGAAGGGAAACGTAT
AACTTTTTGGACATTATGTAAGAAAAAAAAGTCATATTTTCTAGTGATATTAGTACATAG
ATGATAAAAAGTCTCGATAATCCTTATATTTAATTTTGCCCTGCAAAATTATTTACGAAT
TTGTTAGTTTGTAAGCTTTAATCTAAACGTACGTAATTTATGTAGTGACTGAAAATTATT
TGCTAACAGCAAGATATTTATCTGCCGTTACGAGGAACAAATCTTTTATGAATCTTAAAT
AAATTTAGCTTCCTGTTGCGTTTAAAGCAGCTTAAAACAGTCATAGGCACCTATGGTTTT
TAAAGTAACAGTAGTAAAAACATTTTCTGCATAACCTTACCTGTTCAATAAATGTATTTA
AATGTTGTTCAATTGAAGTGTTATTAGTGATAAGGTTCATGTGTGTGTGTATTTGACGCG
GAGAGCGTATCATTCCTAATTTGTTGTGCGAACAAACAATTCAATCTACCTCGCTGTTTT
ATCATTTATGGCATTTGATTGGAAGCCTGTATTGTTTTTAAATCACATGTGAGTGTTGCT
TCGTTTTAATGAAATTAATTTTACCCGTATAACATTATGATAACTTCACTATTAGTTTCT
AGTATTTGATTCATTTCCTGAATAGTAAATAATTTAAGTGTTTTATTGTGGCTCATATAC
TACGCATTATTGCTATGTTCCATAACGCCAAGAAGGCACATTAATTTTTTTTTTTTTTGT
GTATCTGGCTTAAACTGGAAATATAGTGTAATGTGAGCGCCGCTAGAACTGGTGTGATCT
TTAATCAGCTCGTGTGTAGAGCACAACGGTGTATAGAGACAAAATGTACAAAGAAGTAAT
TAAGGTCTTGCATAGATATAAGCCGCGCCAATAAAGAAACGAATCGAAAATGGCGTGTAT
GTACCTGCAGTGACAGATGGTAGGGTCAACAAATAAA
(2857 bp)

- SilkBase 1999-2023 -