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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoN4EE_TR29024_c0_g1_i1
Scaffold_idBomo_Chr4
NCBI non-redundant
(nr)		PREDICTED:_pre-mRNA-splicing_factor_SYF1_[Amyelois_transitella]
Ontology
GO:0000349 P generation of catalytic spliceosome for first transesterification step
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0001824 P blastocyst development
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0006974 P cellular response to DNA damage stimulus
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0021987 P cerebral cortex development
GO:0071010 C prespliceosome
GO:0071012 C catalytic step 1 spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:0071014 C post-mRNA release spliceosomal complex
Transcript
Level		FPKM:18.17 TPM:24.20
ORF EntryO_BomoN4EE10834_complete:A_BomoN4EE_TR29024_c0_g1_i1
Sequence
(Nucleotide)
GTGTGTTCCATAGATTATACACATAATATATTTGAGTGTGTTCTAAAGAAATAGAATTAA
GCTAATTATTCAATTACTCAACTGTTTGAATTGAATTTATAGTACCTACGGTACATATTC
GAAAGCTTTAGAATGCCTCTTCTAGACGGAAAAGAAATCGACATATTCTTCAGTGAAGAA
GATCTTCCGTATGAAGAGGAAATCCTAAGAAATCCATTTTCTGTCAAACATTGGCTTAGG
TACATTGAACACAAGAAAACTGCACCCAAACATGAAATTAATATGATATATGAACGAGCT
TTAAAAGAATTACCAGGATCTTTTAAACTTTGGTATAACTATCTTAAATTAAGAAGAAAA
CAAATAAGAGGTCGCTGTATAGCTGACCCATGCTATGAAGATGTAAACAATTGCTTTGAA
AGGTCTTTAGTATTTATGCACAAAATGCCTAGAATATGGATGGATTACTGTTCATTCTTA
ACAGATCAGTATAAAATAACTACAACAAGGAAAGCGTTTGACAGTGCTCTTAGAGCTTTA
CCAATAACTCAACATCATAGGATATGGCCTCTTTACTTAAATTTCTTGAAGAAACACAAT
ATACCCGAAACAGCTGTAAGAGTGTTTCGTAGGTATCTTAAATTATGTCCTGAAGATACT
GAAGAGTATATTGACTACTTAACTTCAATAGATAAATTAGATGAAGCTGCAGTCAAATTG
GCTCAACTAGTTAATAATGAGAATTTTCAATCAAAACATGGAAAGTCAAATCATCAACTT
TGGAATGAATTATGTGAATTGATATCAAAGAATCCTGATCAAATTCATTCTCTGAATGTC
GACGCTATTATCAGAGGGGGATTAAGACGTTACACTGATCAGCTAGGCCACCTGTGGAAC
TCTCTTGCAGACTATTATGTTCGAAGTGGTCTTTTTGAAAGAGCCAGAGACATTTATGAA
GAAGCTATACAAACTGTGACTACAGTGAGGGATTTTACACAAATATTTGATGCTTATGCA
CAATTTGAGGAATTAAGTCTTAGTAAAAAAATGGAAGAAGTTGCCAAGAAAACTAATCCA
AGTGAAGATGATGATATTGATTTAGAATTGAGACTTGCCAGATTTGAGTATCTTATGGAA
AGAAGGCTGTTACTGCTTAATTCAGTTCTACTTAGACAAAATCCACATAATGTGGCTGAA
TGGCATAAAAGAGTCAAATTATATGAAGGTAAACCCCATGAAATAATAGATACATATACT
GAAGCAGTGCAAACTGTAGACCCTAAATTAGCTGTTGGTAAACTTTTCACACTGTGGGTT
GGATTTGCAAAATTTTATGAAAACAATGACCAAATTGAAGATGCCAGATTAATTTTTGAA
AAAGCTACACAGGTAGCATATGTTAAAGTAGACGATTTAGCTTCAGTTTGGTGTGAATGG
GCTGAAATGGAAATCAGACATGAAAATTATGAGCAAGCCCTAAAATTAATGCAAAGAGCC
ACTGTTTTACCAAGCAGAAAAGTAGCATATCATGATGATTCTGAAACTGTGCAAATGAGG
TTGTATAAATCACTAAAGGTTTGGTCCATGTATGCTGACTTAGAAGAGAGTTTTGGTACA
TTCAAATCTTGCAAAGCTGTGTATGATCATATTATAGATTTAAAAATTGCTACTCCACAA
ATTATTATCAATTATGGATTATTTTTAGAAGAGCATAATTACTTTGAAGAAGCTTTTAGA
GCATATGAAAAGGGTATTGCCTTATTCAAGTGGCCTAATGTGTATGATATTTGGAATACA
TATCTAACAAAATTTTTAAAAAGATATGGTGGTTCAAAACTTGAAAGAGCAAGAGATTTA
TTTGAGCAATGTCTTGAGCATTGTCCCAATGAATTTGCAAAGTCTATTTTCTTATTATAT
GCAAAATTGGAAGAAGAGCATGGTTTAGCTAGACATGCAATGTCTGTATATGAGAGAGCT
ACTACTGCCGTTCTACCTGAAGAAATGTTTGAAATGTTCAATATTTATATTAAAAAAGCT
GCTGAAATTTATGGAGTTCCTAAAACACGACAGATTTATGAAAAGGCTATTGAGACTCTT
CCTGAAGAGAAGGCTAGGGAAATGTGTGTTCGCTTCTCAGAAATGGAAACTCGCCTAGGT
GAAATTGATAGAGCTCGGGCAATATATGCACACTGTAGTCAAATGTGTGATCCTAGAATT
ACAGCTGATTTTTGGAACACTTGGAAAGAATTTGAAGTTAGGCATGGTAATGAAGATACT
ATGAGAGAAATGTTAAGAATTAAAAGAAGTGTGCAAGCCACATATAATACACAGGTGAAT
ATGATGTCTGCACAAATGTTGAGTTCTGCAGCACAGGCAGCTGGTACTATATCAGATTTA
GCACCAGGTATGAAAGATGGAATGAGAATGCTTGAAGCCAAAGCAGCTGAAATGGCAGTA
CAGAGTAAAGGCAACATTCTATTTGTGAGAGGAGAAACACAAGGACTTAAAGAGAGTTCT
GACAAAGTAGTGAATCCTGATGAAATATCAATTGATGAAGAATCCGATCACAGTGATGAT
GATGCTGAAGAGGATCCAATCCAAAAGAAAGATGTACCAACTGCTGTTTTTGGAGGACTT
GTCAAGGATAATGAAGACTAGACTACTCTCTTGTAAAATTTTAATTAAACATGATTCTAA
ATAATAAGTTTTTAATAAAAAATAAGGTTTTTTTACAAGCAATTTTTATAATGTACAACA
GAAATCACAGAACAATTTTATAAACTAAAGTAAACTAAAGTTAAGAGATAAATTCAATTA
AAGCAATTACACATGTTTTATAAACTTGTTAATTATTGATGCACAGTTTAGCAATACCTA
CAAAAAAGGACAGTTCTATAAAAACAATGTTCAAATTAAATTATTGTATTATGGGTCATT
AAATTATGTCTCTTGGAGGAGTAATGAAATGTAAAGAGTTCGAATACATATTTTGATGTT
CAGAAAATGTTAAAATACTAATATCATTATGAACACCTCCAAACATTATTAGTTCACCAT
TTCCTTTTACTAATGAATACATTACAAGTTCTTCAGGTGCTCCATTCATTTCTCCAAGTC
GAGGACACAACCAAGACACATAATTCAGGGTGTTTTCATTTAGTACTGTGGAAATATCTA
AAACATGCATACTTAATGTGTTTCGCTTAATTTTTTTTACAGCTGGTTGTCTTTGCTGGG
CAATGTCTTGTGGAGGAAGTTCCCTTCGATGTTCCAGATGAGCAATCTGCCTTTGATTAA
TGAGATCATTTTCTGGAGCAGAATTGTTTATAGACGAGTCACAAGCAAATGCTGCCATTC
TGTATTTGTTAGCTTCTTGTAGTTGTCTTACTATTTTTAATCCTTTATTCTTATTTTTGT
TCCTCTTTATCGCCAAATCTTTTTTTGCACAGTCTAAGTTATTACTAGATAGCTTATTGT
CTGAACTTAAACCAGAATCATCTATATTAACGTTAATGTCATTTTGTGGTTCAATAGTCA
CTTTTCTAGGACTAATTTGGGCATTACTAGGTCCAGCAACAGGTTCTACATTTGAATCAT
TCTGCTCACACTTCAAAGGATTTGATGGCCTTCTAGGTAGTTCTCCTCTTCTACCATTTA
TATTTTGATCTCTATCTAAAGGCCTTTGCAAACTTTGCTGAACTCTTACAGAAACTGGAG
CCCCTTCAGGTCTACTTAAAGCTGACAAACGCACAGCTGATGTTACTAATGGTTTAGCAC
TATTCCATCCATTTCTGCTTCTACTCAAACTCACAACTTTATCACCAACTTTGCAAGCTG
GATTACACCAAATATTAGCTGCAGCCCATTCCTTATTTTTGACAGCAAGTTCTTTCCATG
TCCAAGTAGATCCTTTCATAGTTAACACCCAACAATCACTATACACAAATCGATTATGCA
ATGTTTGCACACCTCCTAACAGCATCAACCTTCCACAATCCAGTTCCAAAAGAGATTGAG
CATAGCGTGGTGAAGGTCTTGGTTTTGTTGTTGGTTGTTTTCTCCAAGTGAGGGAAGGTA
TATCTAGTACCCAGACATCATTCGAACATTGAATTTGATGACTATTTGCTGTTGACAGTA
CTAACCCTCCAAACACAACCATTTCATCATCCCTCACACAAGCCGAATGTCCAGCCATTG
GTGGTGGGCTATTGGATGCATTGATCAATATCCATTTATTTGTTTCTAAGCAATAAAAAT
GAATTTCATTGAACATTGTGACATTTTGATAGTACTGTGAAAGAGATGGATAAGTCCAAC
CACCAAAGACTATTAAATAATTCTTGTAATGTACCATTGTAGTATAGGCCTTAGGTACAG
GATAAGTGCCAGTTGCTAATGGTCTTACCCATTTTCTAGTTGATAAATCAAATTTCCAAA
GATCATTAAATGATGTAGAATTAGTTGTGCATCCCCCAAATATGTACATACTATTTTCAA
GTATACATGCTGCATGTGAAAATCGTTTTGTTATAACAGGAAACATATTTGTTGGAGAAA
GGTTTTTCCACAAAATTTTAAATTCTCCAATTGCTTTTACAAGTTTTATAGAGGTTTTGT
ATAGAACATTTTGGGCACACGCGTACCATCTCCTACAGACACCACCACAGTTCTCTAAGT
CTCTGTAGGGAGGCAAAAAACTTAAAATAAACTCCAGTACTTCATCAGGAAGGTCTTCAA
TTGTACTTCGCAAAGTCTGTTCTTGTAAAGATTTATGAATGATTTCCATTTTAACAAAAA
ACTACAAACTTTTGTTTGGTGTTCACAAAATTGAAACTATGTTCAGGGTACTCGGAAAAC
CTATGATAATGACATTGATGGTTTATTCAATATCAGTTATGTATTTCAATTGAAATATGT
GTTTTTGTTTGCTTATTGCATGGCTTTGCATTGCAATTTATCATTACAATTGTGGTTATA
TTGACATTTGATTTTAAGTATTTTCTTG
(5008 bp)

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