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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoN4EE_TR28423_c3_g1_i1
Scaffold_idBomo_Chr21
NCBI non-redundant
(nr)		PREDICTED:_RNA_polymerase_II_elongation_factor_Ell_[Bombyx_mori]
Ontology
GO:0001701 P in utero embryonic development
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0008023 C transcription elongation factor complex
GO:0010923 P negative regulation of phosphatase activity
GO:0015030 C Cajal body
GO:0015629 C actin cytoskeleton
GO:0016607 C nuclear speck
GO:0019902 F phosphatase binding
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035327 C euchromatin
GO:0035363 C histone locus body
GO:0042795 P snRNA transcription by RNA polymerase II
GO:0042796 P snRNA transcription by RNA polymerase III
GO:0045945 P positive regulation of transcription by RNA polymerase III
Transcript
Level		FPKM:4.88 TPM:6.50
ORF EntryO_BomoN4EE10411_5prime_partial:A_BomoN4EE_TR28423_c3_g1_i1
Sequence
(Nucleotide)
AAAAAGAAAAAAGTAAAAAGGAAAAATTTTGATTTCAAACTTTAAAAAAAAAAAAAAAAA
CAAATAAACAATATTTCTAGGTTAAATATTCGTGATTTCTCCTAGAACAAAACGTTTTCC
TCTTAAAGTTTGCACGATCGAGTTTTACAAACGAATTTATCTTATTAAAACAATTGACAA
AGTTTTTTTTTTTTTTTCGATTGGAAATTTAAAAAATTAATGAGAAACGTCAAACTTTGA
CATATTAATTGACAAAAAATCAACCGTAGTAACATTGTTCAACAAGCCTTAGCAAAAACC
TATACAAACATTGTATTCAATTACACCTACAAGTTTATACGCATTTAACAACAAACGAGA
ATTTACAAATTAATGATATATTAAGATTTCACGAGACGCGGTTGACAACGAATTTTGCAT
AAAGGAATTAAAAATGGACTATCGCAAAGATTTTTGCATTATTTTTTCTTTCGATGGTTA
AAAAAGGAGTAATAATAATAATAATCAGAATCACTTAATGCTAAAAATAATTTTCAAATA
TGGACGTCAATCTCAGGACAAATAATATGAGACGGTTATATTCCGTACGCTCGAGCCAAA
GTGATGTTCATTTTATGAGAAATTTATATGTAACGCAGTGTAATAAATACAAGTTAATGG
CTCAAACGTATACTAGAAAACACTAAGATTTTTTTATTATTGTATTATGGAGGGTTTGAC
CAAAAGGACCAGAATCTTTGCTTAATTCTAATGGATGTTCAGAACTGGCCGGCTGTTACT
AAAATTTTTCAAAAAAAAAGAACAAGTAATTATGAGATTATACATACAGGATGGAAAAAA
TGGGGAAGTACAAATCAACAAGTAAGTGGCGTGCGAAACGATTCAAAAAATGTATAATAC
ATATAATTTATTTAGCGAGACAGCAAAACGGGGATTCCCTGGTAAGTAATTAATACCCAA
ACTATGTTATTATTTGTTGAAAAAAGTACAACTCACGACCATAGATTTTGGATATGTGGT
TTGCTTCTGTCCGTCATCGAACCGATGTAAAATCGAAAAAATACATTTTGTTTGACGAAG
CTTATTGATGACGTCAATGATGAGAATTAAATTTCTACATGTAACGTGGTATTTTAGATT
AATGGAAAGAAATTTGAATATAAAACGCAAAACTGCGATAAAAATTAAAAAATTCGCCAT
TGAATTGATTAAGGCGAAAATTTTCAATCATTGAATGAAGTTGTACTTGTTTTGCCAAAG
AAAGGAGTTTTAGTGTAAACATTTCTGAGATTATTTCAGGCACTGATGACTACCATTGTA
TTCCACCCTGCATTAACTCATGATTGTCAAGCAGAAAATGAAAGAGGAGGCAACTAATAT
GTCGTGTTTTTATCGTAAAATACTTTTGAATTAAACAAGAACTAATTATATATAGTTAAT
TTTGTTTTATGACGGACATCGGCAAAGATTTTAAACGTTAGGTATCTTACACTTGGGTTC
TAGATTATTGGTTGTTTTATGCTTCTTAATCATTTTGATCGAAACAGAGTTTAGTTTCGG
GAATATATTTACCCGAAATTCGATGCCAATTCAATTGCACGGAAGTGTACTAGAGGATCA
AGGGATGCAATGAGAATAAATCGCGTCTGGCGACCGTGATAAAGTCGGGTTCCAATAGGG
GAATCGAAATAACTCGCCACAAACCGCCATATAAACCGAGAAATTTATTTCTGCACAAAT
GTAGGTCAAAGCTCAAGGCGGTATCGTGGATCCGACAGAATAAAAACACGACACATTCCA
ACGCAAGCGCTAACCGATTATTATCAGAAATCAACTTGAAAATATTTCACTACCAATAAC
AAAGTTTAACAAGAACATTTTTGATATATTCCCCTTCTCTAAATATATATAAAGTATGTA
CAACATGCAATCTGGGCAAGACGAATTAGAAATAAAATGAACGTCCAACATTAATCATAT
GGATGGATTTACAAAAGCGAAAGGACGATATCGGGCTAAACATTATACAAAAGGTTTTGA
TAATTGTTTTCCACAAGGCCAACAGACGTAAAAATTGACTTATTCGAATCGTTACCGGTG
TAACTGTTCAATTGTAAGAAAACCTTGACCTTGCCTAAAGAGAAATAGTAAAAATAATTC
AGCAATACTTTTGGACAATGATAACAATAGACGGCAATAATTTTCAAATGGAATAAAAAA
TGTGGACGAACATATACGATTGGACTATTAAATATTCGACAATTGAATATTCATATATAT
ATTTATATGAATATAAAAATTATTTACACGATAAGAAATGAAACAACCGCACTTATCTTA
ACGTTCCGATAAGAAATGTAGAACATTGATCTGTGGAGTTGGTTTACTGTTTGTCATTGC
CAGTGACATTTCGATAATCGATTTCACGCACCCTAATGTCAATGACAAACAAAAATTTGA
GGGGAGGGGTTAGCTTTGGGGGGGGGGGGGGGAATTCGAATTTCAATAGCGGCTTTTGTC
GTAATTCACTTCAATAGCATTTTTATCGCATACTAAATATAGGCATATTACTGTGACAAT
AACCGATAGTGAAACTTGAATCTGACTTGAACTGAACCTATTTTTGTATTTTGTTTTTTT
TTTTTTTCAATTAACAATTTCGTTAAAGTACCTAAACATGAACGAAACAAATTATAGGTC
TATAATATCGCGAGAATGTCATATACTCGTACTTCTCAAATATGTATATATGTAATATGT
AACAGCGTATGTTTGTGTTTAAATCAGTACGTGCTCGGACATCGGATGTTAGGGTAACCG
TTATCATTCGACACCTTGGGATATGTTGTTTTGAAATATTTACAGGAAAATCGTTAATTT
TTTGCATTTTATTGTAACGCGGGTATTCGCTAAGCAAAATGTTCACAACGAGACATCAGT
CTTTATATTCAACTAAACACCAATACGCCTGTTGCTTTTGTTCAAAGAAGAAGCACATTG
ATGATAAACCTTCAAGTATGAAACCGAACGAGGTGACGTAATTACAAATCTTCAAATAAA
AAAAGCAAATGGCCGATGTTTGTTGGATCGTTTTGAGTCTCTGTGTAGTTGGCATTCAAG
AGTACCCGTCTTGACATAACTAATAATTGAAGACATGAGTGGATGAAGGGGTTAAGTACA
AATTTAAAGATTTTTTTAGTTTTTACATTGAATGAAGGTGTTAGGTGCCTATAAATCATA
TTAGACTTTAAAACTCCGGATTTACGAGACTATTTTCAGAAATCGCATGTGATGAAGGAG
TTATGTACGAAGAAAAAGTATTAGTAACAAAAGTTTATTGCCAGTTTTCTCAAAATTAAC
AAATTGTATCGAAATCCCCTTTATCCACTCATGTCTTCAATTGGCATAACTAATAACAGT
GATTCTCACACATTTAGCAAGCCTCAGCGAAACGTGGTCAGGATTCGGTGATATTGAATA
AAATAACAACGCCCGTGTTGGAGATGGTAAAGTATATTAGTGTGATTTTGTCGTCCGTAA
TAGCGTCGATCAAATGTCTTACGGTTACCTTAACATCGACGTCTAGAGGCGGCCAATTGG
CAGGTCGCAGCGTGTCTCATCAATACATAAATATCATACAGGGCCAAGTTCATTAACGCT
ATAATCTCGATTTTTCGTAATTTACTAAGACCCCTGATAATAGCGAGGCAACTGCAACTT
CAGATATTTTTAAAGCCTCACGCCATTGTCTTTACAACACACACACATCGCAACCAAAAC
GTTTAACCGTCCATTGTGTCACGAGTTTTCACAATGGCGCCGTAAAAACGAATTGCTTTA
TAAAGAAATGAAATTATTGTGAGATAAATTCACAATAATATCAGTTTATAATAATACCGG
TTGTGTTAAATCGTGTATTCAAAAGGCCTAAAGGTAAATATTGAGACTGCGTTAAAATTT
CGTGAATATGAAATTGTAATATGAGATAATTAAAAAATAAAAGACGTAATCACCGCTTTC
GTCAAACCTGCCTAATAACTAAAACAGCAGAAAGATTCGCAACGCGTTGTTTCACAATCT
CAACACAGAAAGTCGACGTGAATACATCTACAGAAATCTTACATAACTGCAGAGTTAAAC
AAAAAAAACAATACGTTTTTCATATTAATAAAATACATATTTGAAAACTATTCTATAACA
AACAAACTATAACATTATGCATTCATTACTTTTATCACTGAAATTTCTCATTTCGGCCTG
AACGTTTAGAAAAACAGATTAAATATAAAGTGTGACATTAAAAAAAAAAGCGTTGGAACA
CAAAATGACATTTGAAAAGGCATTCCGAAGAGTCAGCGCGGCTTCGTCAGAACCGTCGAG
TCGCAGACCACAAACGCACATGAATAATAATAATAATATTAATATATCTATATATGTACT
ATAATATATTTAAAAAAAGCTTAACATCTGTCACTGTACGGGAGCCACTTCGTATAAAAG
AAGAATATTATTATTCGAAGGGACCAGGGGAAGAACAAGCTATGGTCACAAACACAACAT
TCTCGTACTGTAATAAACAATTTTTTTATTGAGGACTTGATCTTTATTAGAGTTTACTAA
AAAACCTTAAATGCGTCATTAAATAATAATTTATACTGTAATGCGGATTGTAACGTCGAA
TTTAAAACGAATTTTTTATAAAATGTATTTATTTGTAGCATCGCTTGTTATTCCGCTGTA
CCTTTCGTTTTGGTCGGTTACATTGTCCAGCGCGTAGTGCGAGGGCGCGTAGTGCGGGGC
GCGTAGTGCGGGGCGCGTAGTGTGAGGTCGCGCAGTGCGAGGTCGCGTCGCACTAGAGGC
TGCGGGCGGCGGGCGCGGCGTTGCTCGATTGTCAGTACGCCTGAGTCGTACTCGCCGTCG
ATACGCGATCCTGCTTCAGGTTGCGTAGCTGATCGTACTGGTGCACCATACGTTTGAGAT
GAGTTAGTTTCTTGTCTAGATAGTTGACCCTCCGCCGCTCGTGTTGGTAGGCGGCGTCGT
TGCTGACGCGTCTGTATTCCTCGACGATGCGTTGCTCTATGCTCTGATGGTGAGGCGACA
TGGGTTGCGCCCGTTTGAGTTCGTTCTCGAGCCTAGTGAACAGCGCCGCAACCTGCGCAA
CCCTCGCGTACAACTCTCTGTACTCCGTGTACAGTTCGGCGAATTCGTTTTTGTAGGCCC
GTCGCATACCCGAACTCGTGATCGGCGGGTATCGCCTTTCGATCTCATCTAAATCAGTCG
TATTCTCGTCAGGCACAGACGTTAATTCAGTATTTTCTAAGGGTTCCGTATTTGTGATGT
CTTTTTCTGTGATATTAGTTTGCTCTACGGGGGGACTACTTCTAAAGCCGTTCGGTTTGA
CCGGAGGACTGGGACAGATTTCCTTGACTGTGGTAAAGTTAAGGGTGTAACCGTTGTCCT
TTTTAACCTGCGTTGTCGTCCGTTCATCCTCGTTGTCGGATGCGTGCCGCTCCCCCGACG
AGGTGGTGGCGTACCCGGACGAGGGCGGCGAGGGGCGGCGGTAGTGCGAGATGCGTTGCT
TCTTAACGGCGGGGGCGTCGTCCCCGAGGGCGGCGGCGGGCGGGCCGGGGGGCGCGGGGG
CTCGCTTTGCGCCGGGGGACGCGCGCGGCG
(5670 bp)

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