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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoN4EE_TR28389_c0_g1_i4
Scaffold_idBomo_Chr16
NCBI non-redundant
(nr)		PREDICTED:_heterogeneous_nuclear_ribonucleoprotein_R_isoform_X3_[Amyelois_transitella]
Ontology
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0006397 P mRNA processing
GO:0007623 P circadian rhythm
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0030529 C ribonucleoprotein complex
GO:0043025 C neuronal cell body
GO:0043231 C intracellular membrane-bounded organelle
GO:0045727 P positive regulation of translation
GO:0048027 F mRNA 5'-UTR binding
GO:0070937 C CRD-mediated mRNA stability complex
GO:0071204 C histone pre-mRNA 3'end processing complex
GO:0090367 P negative regulation of mRNA modification
GO:1990635 C proximal dendrite
Transcript
Level		FPKM:0.44 TPM:0.59
ORF EntryO_BomoN4EE10049_complete:A_BomoN4EE_TR28389_c0_g1_i4
Sequence
(Nucleotide)
GCGGCGGCGGGGGCGGGGCCGGGGCGGGGGACGGCACTAGCTCGCGGCCGCCGGCGACCC
CCACCCGCACGCCGTCGCGCCCAGCCGCCGCTTCGACTCTCCCCCTTGGTTCTCGTGACC
CCCGTCGTGCTTGCGTTTACCTGGTAAACTTGGGTTGGCGCGCGGGTTGCCAGGGGTGGC
GCTGGGCGTGCGCCGGCCACGTGCGGCGCGGCGAGCACCACCACGGGCCCCAGCCGCGCC
CCCGCGTCGCGCCCACCGACCGCCCGTCCCACATGACCCAGCCGTAGTCGGGGCGGGCGT
GCTGCGGGCGCGGCGCCTGCTGCGGCGTGCGGCCCCGCATGGCGTGCGGCGGCGAGCACC
CGCACCAGTCGAACCCAGAGCGTCCGTGTATCATCTGCATCATACGACGTTCGCGAGCAC
GTAGGATCTCCTCCTTCTTCTTCTTGTCCGAAGGTGGTTTCGCCAGTGACACCTCCAAGC
GGGATCCTCCCAGGTCTTTCCCGTCCAATTCTTGCATCGCCTTCACCGCGCAGTCCCTGT
CGTCGAAGTGCACGAAGGCATAGTCCTTGATCTTCTTAACTCGCTCCACGTTCCCGTAGT
GCTCGAACTCTTCTTTTAGCGCCTCCTCCGTAATGTCCTGAGTCAGGTTCCGCACGTACA
GCACCTTCACTTTGCTCATGGTCTGCTCGTCGGGTTCTTCTTGAGGGTCAGCCCAGTCGA
CTATAATATCACAGCCCCAAACCTGCTTTATCCTCCCGGTGCCGAGTCTGCGCTTGGCCA
GCGAAGCCGCTTTGTGAGACTCGTATTCCAAAAAACAAAATCCTCTATTTTTCTTCTTGT
CATCGGGCGAACTATATATAATGACTTCAACGAGGCCAGGTGCGTGCTTAGAAAACTCCT
CAAACAATTCGTCCCGATCTCGATTCTTGGGAATATTCCCCACGAATAACCGGTGATTGT
TAAAGGAAACGGTAACGCCAATCTTTTTCCCCTTTCGAATTTCATAATCATTCAGCTGCA
AGAACAATTGGAGGGAGAATGGCCGATGGCCGAGGGCCGAGGCTGGCCTGGGCCGGCTCG
GCCAACAATGACTGGAGAGGGCAGGCAGGGGCAGGCAGGGACAGGCGGGGGCAGGCAGGG
ACAAGCGGGACAAGCGGGGCACCCTCAGCGGTCCACACCAAGCCCCACGCACTCAACCCC
AAAACATCTATCAATTCTTTAATTCATTCGAGTGAAACTTTACCTGTTAATTTACCAAAC
TCTTCCAGTATCTCCTCTTTGCCTTTAGACTTGGGAATGTTGCCGACGAAAAGTCGCAGA
TTCGGTACGCTAATCTTAATTCTCAGAGTCTTCCCTGGTTTTATTTCGTGATTATCGAGC
TGTGGGAAAAATAACAAGGGAACAATTTTGAAAAAGTGTGATTCGGATCCGGTCGGGCCG
CGTCGAATCGCAGATTCGGACGTTCGGGCGCGTCGGTACTGTCCGCCGGCCGAGGCAGCC
GCCGCGACAACGGCGCGACAACGGCACGACAACGGCGCGACAACGGCCGCTCCGGGATGA
CGGTTAGAGCCAATCATGATGTGTTAACTGAACTTTGGATGACAAGCCGAAAGTGTTGGA
CTGAGCAAAGAGGAGAGCCTGATGTTTATTCTCGGTTCGAGAACTTTTTGAAGCCAATTC
AAAGTTAACCCTGTAAGTGGACCGTTTGATGAAGTGAAAATTAAAAGAAGCGAGTAGTAG
TACTAGTGTGATGGTGACAAAACATAAAATGAAAGCAACTTAAAACTGAACGAGGTGCAA
CAGTGAAGTACGGGATCATGTCTGAGGACAAGCGAGGCTTACTTCAGTTTAGGTGTTACG
GTTGCACATATACACAGGTTGTGATTATTATAGTCGCAGAGGCCATTCGCATCCGGTTTC
ACACATGGCTGCCATTAATCACGAATAAAAATCACTTCGAATTACATTTACAAATGCGAC
TGGCCTCCTCCAGCGGAATATTAATAACATGCTATATAATGACAAGCTTATAGATAAACA
TCCCAAATGACTGAGAACTAGTTCCACAGGCAATGGTTGGGGGGCTCGTCGCGGTGCCGG
GGGCGCGGGGGGCGGTGCGGGGAGCTCTAACCGGACCTAACGTTTGTGTGTCCAGGACTG
CCTGGAGCCGCCGCTGACTGCGCTGCCCACGGGGGGCTGGATGTGTCCGGACCACG
(2216 bp)

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