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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoN4EE_TR28389_c0_g1_i1
Scaffold_idBomo_Chr6
NCBI non-redundant
(nr)		PREDICTED:_heterogeneous_nuclear_ribonucleoprotein_Q_isoform_X1_[Amyelois_transitella]
Ontology
GO:0000166 F nucleotide binding
GO:0001649 P osteoblast differentiation
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0006397 P mRNA processing
GO:0007623 P circadian rhythm
GO:0008143 F poly(A) binding
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0017148 P negative regulation of translation
GO:0030529 C ribonucleoprotein complex
GO:0043025 C neuronal cell body
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
GO:0045727 P positive regulation of translation
GO:0048027 F mRNA 5'-UTR binding
GO:0070934 P CRD-mediated mRNA stabilization
GO:0070937 C CRD-mediated mRNA stability complex
GO:0071013 C catalytic step 2 spliceosome
GO:0071204 C histone pre-mRNA 3'end processing complex
GO:0071346 P cellular response to interferon-gamma
GO:0090367 P negative regulation of mRNA modification
GO:0097452 C GAIT complex
GO:1990635 C proximal dendrite
Transcript
Level		FPKM:1.55 TPM:2.06
ORF EntryO_BomoN4EE10039_3prime_partial:A_BomoN4EE_TR28389_c0_g1_i1
Sequence
(Nucleotide)
GCGGCGGCGGGGGCGGGGCCGGGGCGGGGGACGGCACTAGCTCGCGGCCGCCGGCGACCC
CCACCCGCACGCCGTCGCGCCCAGCCGCCGCTTCGACTCTCCCCCTTGGTTCTCGTGACC
CCCGTCGTGCTTGCGTTTACCTGGTAAACTTGGGTTGGCGCGCGGGTTGCCAGGGGTGGC
GCTGGGCGTGCGCCGGCCACGTGCGGCGCGGCGAGCACCACCACGGGCCCCAGCCGCGCC
CCCGCGTCGCGCCCACCGACCGCCCGTCCCACATGACCCAGCCGGCTGCGGTCTGTTGGG
AGGCTGGCGGACGGCGGACGGTTGCGGCGGCCCCGCGTAATCAAAATAGAACTCATCGTA
CCGGTAAAACGGCTCATTGTAGCCACCTCGGTAATCACCGTATCCGTAATAGTCGTAATC
ATAATCGTAGTCGGGGCGGGCGTGCTGCGGGCGCGGCGCCTGCTGCGGCGTGCGGCCCCG
CATGGCGTGCGGCGGCGAGCACCCGCACCAGTCGAACCCAGAGCGTCCGTGTATCATCTG
CATCATACGACGTTCGCGAGCACGTAGGATCTCCTCCTTCTTCTTCTTGTCCGAAGGTGG
TTTCGCCAGTGACACCTCCAAGCGGGATCCTCCCAGGTCTTTCCCGTCCAATTCTTGCAT
CGCCTTCACCGCGCAGTCCCTGTCGTCGAAGTGCACGAAGGCATAGTCCTTGATCTTCTT
AACTCGCTCCACGTTCCCGTAGTGCTCGAACTCTTCTTTTAGCGCCTCCTCCGTAATGTC
CTGAGTCAGGTTCCGCACGTACAGCACCTTCACTTTGCTCATGGTCTGCTCGTCGGGTTC
TTCTTGAGGGTCAGCCCAGTCGACTATAATATCACAGCCCCAAACCTGCTTTATCCTCCC
GGTGCCGAGTCTGCGCTTGGCCAGCGAAGCCGCTTTGTGAGACTCGTATTCCAAAAAACA
AAATCCTCTATTTTTCTTCTTGTCATCGGGCGAACTATATATAATGACTTCAACGAGGCC
AGCTGTTAATTTACCAAACTCTTCCAGTATCTCCTCTTTGCCTTTAGACTTGGGAATGTT
GCCGACGAAAAGTCGCAGATTCGGTACGCTAATCTTAATTCTCAGAGTCTTCCCTGGTTT
TATTTCGTGATTATCGAGCTCGTGCACGGCCCGCTGCGTGGCGTCCCTGGTGGTGAAGGT
GACGAAGGCGTAGCCGCGGTTGGCACCCGTCATGGGGTCCATCATGAGTCGCAGGTCCCA
GATAGTGCCGCAGCGTTCGAACAGCGGTATGAGTTCGTCCTCGTACATGTCCTTGGGGAT
CTTGCCGCAGAACACCTCGCAGCCGGCGCCCGGCGTGCCCCCCTCCCACCCGGGCGGCGG
ACCCCCATACTTGCGTTGACCTGTAGTCACATCTAACGTGTAACCGGTTCGGGCCAAGAT
TTGCTTTATCTTCTCCTCGTCGGGGCCCTTGACCTGCACAGTCGGAGTCAGAGCGGGAGC
ACCGGGAACGCCCGCCCGACTTTTCTGTCTATAGGTCTTCATAACTCCACACAAAAAAGC
ACTTTTATTGGATACATGTTCGAGATTTGAATCTAAAAATTGTCCAAGAACACTTAAAGC
ACCGTCGGATGGAAATTCTTTTAAGGCATCTAGAGCACGCTCGTCCAACTCTGCGTGCGC
TAGCTTTCCAGTCTTATAAATGTCGTCGAGCTTGGCGGCTACCTTAGGATCCAAGCCATA
CTCAATAAGTTTGTGGTAATCTTCTGTCCGGCCAACATCAGAATCCTTCCCAGCTACCTC
ATCATAGGATATTTCTCCATTGCCCTCCGCCATTCTTTATTTTACAATTTTTGTAATTTT
GTAACAAAATGACAATTCTCTAATCGTCCGAAAAACAAAAAAACAAAAGATGTTCAAACA
TATGAAACAGTGAAACAATAAGATTGTGCACTCCTCATTCCATCCGGGTGAAGGCGAATT
TCAAAAAGCGAATGCGCGGGTTATTGAATTTCTATGATTAGAGATGAACACAATTTTGGG
CCTAAAAACCGAAAAACTTAGTTAATACAAAAAAACTAAAACACAACTAAACATTACACT
ATAGTGATGCGAATTCCGGCGGTCAATGACCGAAATAACACCGTACAGTAAACTGACAGC
TCTATAGAAACTATTACACAAATCACTGTACGAGTAATCACTTTTCAACACTAAATACAG
TCTTTCTACAGAATAATCTAACACTTAAAACTTTCCGCGCATGAAACTTTGGCGAATGCA
AAATTGCAATAAGTTAAGAGTGCAACTGCATTGCACCCGATAAGAACCGGCCGGCGCGCG
CCTTCCTTTCTAAACAGAATCCGTTTGGGTTCACTATAGAGTATCTCCAAAGGTAAAAAA
CACTTTATTACACAATCACTGAATGCCAGAATCTGTAAGTAACACTGTAGACTAATATAA
TTACCTATTAATTTTGCTAGTTGTGGCCGAGACAGATATGGCGGCACCGCGGTCCGCGCG
ACGTCAACGTGACCGCCAATACCTACGGGGTTCTCATAACGAGGCGCGTTCGCGGGATAT
GCAACGAGGAGTGCATTCAAACTTTTAAGGCCACTAAAATTTGCACAATGAATTCTGTTG
ATAAATTTCTAATCTCTCTGTTATAAACCTAATGACAGCCGCAATGACCGATAATGTATT
TTTTATTATTGCACAGAGAGTTTTTGCAATGGTTGTGAATAATTTTGAATGTGAAAGAGC
GCGGCGCGTCGCGCAAGGCTGCCGGCCGC
(2789 bp)

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