SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoN4EE_TR101485_c0_g1_i1
Scaffold_idBomo_Chr25
NCBI non-redundant
(nr)		PREDICTED:_intron-binding_protein_aquarius_[Amyelois_transitella]
Ontology
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:23.80 TPM:31.70
ORF EntryO_BomoN4EE51635_complete:A_BomoN4EE_TR101485_c0_g1_i1
Sequence
(Nucleotide)
AAGGTAATTGAATGATTTATTTAATGGAATCAATGAGGTTATGAGTTCGCGGCGTTCGGT
TCATCGACTTCGTTGAGTATGTCGGTGGGGGTGAAGGCGTCCGACTCGTCGTCGCTGTCG
GGCGCGGCGCCGGGGTGCGCGGGAACGTGCCCCCCCGCGCCCCGCGCACGCGCCGCCTCC
CGCCCGCCTGGCGCCCGCCAGCCACTTTCCTGTCGAGCGTCGGGTGCGTCGTTGACAATG
TGCAGGTACATGTCGTAGACGTAGCGCGCCATGTGCGGCATGTCCCGGACGGACAGCAGC
AGCTCCGGCGGCACGGCCACGCCCGCCGCGCGCTGCGCCGGGTACCGCTCGCCCGGGACT
AGTTCAAGCTGCAGTGGACGCTCCACGAGCTGATTGAATGTAGGCTGTAGCTCGTAGCAG
TTCCTGAAGAGGTTGGCCCTCGCGAATATGTATAGGCCGAGACGGGCTCTTGAGGCGGCG
ACGATGAGTCTCCGCAGGTCGCGCACGTGACCCACCGCCTTCGTACGGACCAGCGACACT
AGAGCTATGTCGTTCTGCTGGCCCTGGTACTTGTCTACCGTCGTCACCTTGTGAGGTCGA
CCGATGAGTGGATTATCGGCACATCGCTTATCTATGACGTCCCTGATGAGATGTTTCTGC
CCGTTATATGTGGTCAGTATGGAGATGCGCTCTGCAGGCCATCCGATCAGGCGCATGTAC
ATGAAAACCGCTACAACGTATTCTGCTTCCGCTAAATTCTGATAGAAGTAAGGGCTGGGC
TCGGTCTCGCCGACGCCGTTGAAGTCGTCCACGTTGACGAGCTGGAAGTCGTGTCGCAGG
CCCGCGTTGGCGGCGCGGTACTCCGGGAGCTGCGTCACGTGGCACAGGTCGCCCAGCGCC
CGGTAGCGCCAGCGGTACAGGTTGCAGATGCTGGGTCTAGCTCGACCTTGTGCGTCCAGT
TCCACGTACGGAACACCCAGTCTGACCATTCTGGTGAACAGGCTCTGTTCCATGTTGCAG
TACTTCTGGAACGCCATGTTCTTGACGACCGGGGGCAGCTGGTGGTGGTCGCCGATCATG
ATCCAACGCTTCAGCCGGGACCTGCCGTCCTGCGGGTTCTGCAGGAGCAGCGGTATGAAC
GTCTCGATCTCGAGGATTTGAGCTGATTCCTCCATCAGTATGTTGTCGTATTTGAAACCC
ATTTGCACTAATTCGGAACGTTTGAGGGCGGCGTGCGTGCACGTCATCGCGATTATTTTC
GCTTCTTTGACCAACAGGTACTTGGACCGATCCAGTCCGGACCTCAGTAGTTCGAAGGCT
CGGAACTCTTCCAATTCCTCGAATATGTGATCAATATACCTGTAACAGCTTTTGGCTATT
TCCATGTCCTCTTCGTGAGACTTCCTCAGGAACAAGGGTTTCGGGGCATCATCGAAGAAT
TCGTGGAACGGAAACTCCTTGCTGACTATCTCAATCGAGTTTGTCTGTTGCTGGCAGTTC
TCGAGGAAGGCTCGCCAGCGCGGCCGCACGTGGTAGACGTGGAAGTGGTGCGCCAGCTCG
CACGTAGCGCCGGCGTCCGAGCCCGCGTCCAACGTTCGCTGCAGCCGCGACACCAGCTCG
AGCAGCTCCAGACGCTTTGCCAACACATAGTTCACGCGGCCGTATCTGGAGAAGTCTTTG
TCTGTCTGAAGAGCTTCCTCGCCGTGACCGAGACGCAGTAGATGCCTTTCGTCTACATCC
AGCTCGGCGACCTTCTCGAATAGCTGATTCAGGGCCTGGTTGCTGTGCGTTACGACCAGG
GTACGTTGCCACGGGAAGTTGTGGTATATGTTCGAAATTATTTGAACTGCCACGTCCGTT
TTACCAGTTCCAGGTGGACCGACGACCAATGTGAGTCCAGGTTGCATTCCAGAACGTATA
GCTTCCACTTGTGTCGGAGTGAATAGTATATTATTCTTCTTTGGTTCGTTGTACAAATAC
GGTCCCCTCTTCGGTTGTACGTGGGGTTCGACAATGATCGCTTTGCGGGGTTCGTCTTCG
TCCATAGCTGCGTCCCCGACCTGCTGCTTCCGTACGACGTTTTCGAAAGTCAACTTGAAC
GGCCTGACGAGCTTCCTTGGGTCGTTGGTCTGCACCTTGATTTCGTACCCCGGGAAGCTG
TTCCGCAGATGATCCATGTTCAGGAATGTATCGTTGAAGTCCAGAGTAGCTATCTCGTTC
GGCATCCTCGTGTAATGAGCTTGACCGGGATCTCCGTAGCCCAAGACTATATCGTGAAGC
CAGTCCGGTACAACGCATTCGGTGTTCATTAATTCTCGTATCGTTTCCAATACGGCCTTG
AAGTTGTTCTCTTTCGGTTTACGACGCATAACTATATTGAAAGTCTCGTACACGTCCTCA
TTCCCTTTACTAGCTCTGTCCAAGTCAAGTCTGTATTGGTTAGGATCGAGTAAGAGCCTG
AAGGTCCTGGAATCTCCCTCTAACTCCGGCCGCGGTTCCGGCCCGTCCTCAATGACTCTG
CCGGATGCGTCCAGCATACCTTCAACTTCGCAACCCCTCACGTACACTATCCCCGCCTGA
TCCACCATACTCTTTCTGTAGTCATACTTTGTACCTATGCCTTGTGTAGGTCTGACGGTT
ACCAGGAAGCAAACGTCATGCTTCCTGAGGTTTTCCCATTCGTGTTTTATCTCGTTTCTG
AGGCTCAACGTGACGGTGACATCGGCTCGGACCCTCGACGGGGCCTTCTCGCCGATGTTC
GGTTTGGCCACTTCGACAACTGCGAAGCTCTTTATAGGATGCGCCATCCGCGCCCAGCCC
CCAAAATAAACGCTTCCGTCTTCTGAATTCCACGGCGCCAATCTGTATACGGCGTCTTCA
ATGTCTTGTCTTATCTCGTATGTGCTCTCCAAGCGGAACAAATTGAAGTTTCGTAACAGA
TAGTCGTGTAATGTTAAAAATTGTAGATTCAGCTTAGGCAGGGCTAGGCAATTCTCTCCG
CTGTATATCTCTGTGGGCACTACATTCTCGTCCCAGATAATCTCTTCTGTAGGATACAGG
GGCATTAAGTTCAATTCTTCCAATTGTGAAATTCGCCTCTCGTGACGCGAGATCAATAGC
TCTCTGAGGAAATCTTTGTCGAGTCGGTGCCAAGGCGTCTCGTCTTCTTTTCCTTCAGGA
GGAACCAGGTTCAGGTACGTGGCGATTGCTCTTAAAGCTTTGTCACTCAAATTCTTGAAG
TGCTTCTGCAACGTTTCTCTGGTGTCGACACTCGCTACATTCGCGAGGGCAAATAAACGA
AGATCAGGAAACTTGGAAAATGCGGCTTTCTGTAGTGAGGTGATTTTTGAGTAGTGCTGT
AATGTCATGTCACGGTCGGTCATAGGATCTCCGGTCTGATCGCTAATCTCAAATCTTGCG
TAAAACTTCAGCATTTGTAGCAGTTGTGTAAAGAGTTGCCCCTCTGGTCTCTGGGCGAGT
GCTGACATCTGACAGCGCACCACGAGATGACAGTCGTCCATCACCGTGTTGAAGAAACGG
CGCGTCGGCAGTAAAGCCTCCAGGTCTATCATCAATTCCAGGAAACGTTCGCAGTACCTC
ACAACATACGAATCAATTTCCCCGTTTTCGGGTATTTTCTCTAGAATTCCCATAAACTTG
ATCATCAGTCTTTGCAAATATCTTCGTTCCCAGTTCAATTTTTCCAATAACTCTGGCTTG
TCCTTTTTCTGTATGGCTCTCCAATATTTACGCCACTTTGGTACCGCTTTGAATTCCTGA
TTTCTTCTGCCTTCTTGTAAACTAATCCACATACTAAGGGACACAAGCCTCTTGACTTGA
TCCCTGCAGAGCTCTACTTCCATGCTGCCGAAGCAATGATTCAGGAATAGCAGTAATGCA
GTCTGATCCCTCATGTTACGACTAGTGTCGTCTTCAGCAATACTGGCACGAAGGACTTGT
TCAAAGAAGGCCGGAAAGTGCTCCGGTTGCTTTAAAAATGCCTGCCAAGCGGGAACTCGC
TCACGGAACTTCTCATTTATCATCACTATTATAGACATCATGTGTGAGTGAGATGCCTTG
CCAGCTTCATAGTATGGCCACAGATAGTTCTCGAGGTATTGTGAGAACTCTAACATCATG
ATGCGTCGAACTGAGAAACTTGAACCCTGGATTTCTGCATGGTATATTGACTCCACAATA
GAAGCATCATAAGGTAAGTGAGATTCCTTGGTTTGCGGTGACCAGTACTGATTTGCAAGC
TGTGTTATTCTATCCGCGTTAATCTGTGATAGTGTCGGTAATGGTATTTTAAGTTTATCC
GTAGGCTGTGGGGTTTCAGTCTTCATCTTGTAGCTATTTAAAAGTAATTATTATTGTGCC
AAATGTCATCAAAACAAGTACTATTGTTTTTGACAATGGGGCATTTGTTGTGACATTAAT
AGTGAT
(4446 bp)

- SilkBase 1999-2023 -