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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c7441_g1_i1
Scaffold_idBomo_Chr20
NCBI non-redundant
(nr)		protein_DEK_isoform_X3_[Bombyx_mori]
Ontology
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0007165 P signal transduction
GO:0016568 P chromatin organization
GO:0019079 P viral genome replication
GO:0042393 F histone binding
GO:0043292 C contractile fiber
GO:0044822 F RNA binding
GO:0045815 P epigenetic maintenance of chromatin in transcription-competent conformation
GO:2000779 P regulation of double-strand break repair
GO:2001032 P regulation of double-strand break repair via nonhomologous end joining
Transcript
Level		FPKM:76.63 TPM:39.86
ORF EntryO_BomoMSG1506_complete:A_BomoMSG_c7441_g1_i1
Sequence
(Nucleotide)
CGTGCATTTGTGTTGTCCGGTGTTTGAAGACGCTTGGAATTCGCTTTCAATTTCTTCGTA
GGAAAAATGTCGGGTGATACCGATAAAGCAAAAATCAGTGACAATCAGGATGAAGACAAG
AAATCCAGTACTGGCGATGGTCAAACAACTGAAGACGAGTCATCCCAGGACTCGAAGGGT
GAGTCGCTGCGGTTTCAAGATTCTGAGGCCCAAGGTAACGCTGATGTAGATCAACCAGAT
GCAAAAGAAGAGAATCTAGAAGGTGACGTAAAGACGACAGCCAACGGTAAGGATGACGAG
ACCGGCGGTGATGACTCCAAAGATGAAAAGGATAAAACCGATAGTGATACTAAAAAGGAG
GAGAATGGTGAGACACACGATGAAGATGAAAAAGACGATGTGAAGAGTAATGATAAGGGC
GCAAAGAAAGCGCCCCCTAAGAAGAAACCTAAGAAAGAGGATACTGAGGAAGAAGACGAG
GATGACGAAGAAGAGGAAGAGGAAGAGGAGGAGGAGGAGCCAGAGGAAGGAGATGAAGAT
GATGAAAAGGAGGACAAGAAAACCAAGGATAAAGTGAAGAAGCCGGCAAAAAAAGCAAAG
GGCGATGACGATGAAGGTGATGATGATGAAGGTGAAGAGGACGAAGAAGAGGAGGAGGAA
GAGGAAGAAGAGGAGGAGGAAGCTCCTAAACCCAAGCCCAAGAGAGAGCCTACGGAGCCG
CCGGTACCGCTACCCGCTGGAAAAGGTATCCCGCTCGGGCACATCAGCAATGTGGAAGTA
TCGTTGTCGCGATTCAAGACCCAAGATCAGAAACTACTACATCAGTATTTGTATGGGCAA
CTTTGCCTGGATCGTAATGTTAAACGCAACATCAAGAAGTTCAAAGGCTACGAATGGGCA
ATCGGCTCGTCCGACTACAAGGCTAAACTGGAGGAGACCACCAAGATGGAACCCAAACAG
TTGCGTACAATGTGCGAAATGCTTGATTTGGATAAAAAAGGGTCGGCGTCGGAGCTGGCG
GGGCGGCTGGTGGGGTTCCTGCAGCAGCCCACCGCCAACAGTCCGCACGCGCGCGGCGTG
GCGCGGCCCCCGCCCGCCCCCACCTCCACGCCCGGCGGCCGGCCCCGGAGGTCCGCCGCC
GTCAAGGTGCATAACAGAGGTTACTCTGATGAAGAATATGAAACTGATCCAGAACCGAAA
GTCAAAGGGCCGAAGCCCACTAAAGAAGGTTCCGAAGATTCAGACGGTTCATTCAACCCG
AGTGGCTCGGAGGAGGCGGATTCGGACTTTGATCCTGAAGCCGGTGAGGGTGTCGCGAAG
AAACGTGCGCCGCGGAGACGATCCGCCGGGAAACCCACCAAACGGTCCTCCAAGAAGGGC
AGCAGCAAGGGGAAGAAAGGAAAGCAGGCTAAACCGAGTCGCGGCAGACGAGCAAAGTCC
GAAAGCGACGAGGAAAGTGAAAAATCTGAGAGTGAAAGCGACGCAGAGTCCGGTAGCGAC
GGAGAGGAATCAGATGAGCCTAAAGCGAAGCGAGGACGGCCATCGGTGGTAGCTAAGGGA
CGCAAGGGTCCGGTCGCAAAGAATTCTAAAGCAACGCCCGTAAAACGGAAAGCACCTACG
CCACCTGCTAAAAAGAAGGCGGTAGCTGGTAAAGCCGCAGCAGGTCGACCGGCCAAGAAG
GGGAAGAAGGCTTCGTCCGACGAAGAGTCTGGCGACGGAAGCGAGGAGGATGACGACGAG
GAGGAGGCCAGCGACGACGAGAGCGGAGACGACTCGGACGCGCCGACCGACAAGAAGGCT
AAACGACCGCCTACTGATGAAGAAATAAAGAAGTACGTGAAGCAGATCCTGGAGGGCGCG
AACCTCGAGCAGATCACTATGAAGACTGTTTGCAAGCAGGTCTACAGCCACTACCCGGAC
TTTGACCTCGCGCACAAGAAGGACTTCATCAAGGCCACGGTCAAGTCGTGTATTTAAGAT
GTTAGGAGTTAAGGGAGCAGTGTAGATGTCTACATAGTATACCTATAGTTTATAAAGGAC
ATAGTTATATATTATTACAATAATAATATATTATGAAAATAAAAGTTTAATTAAAAATAA
TAATAAAAAAAAAAAAACAATAAAATGAAGTGGAACGGATAGACACCCGCTTTACTTTAC
AAGCTTATATCATCGTGAGCGACGAGCCCGGCCGCATCCTACACATCTAGTAAGAAACAC
CACTCCAAACGAAAATTAGATTAATTGATCCCGTACTGGCGTCGACGCAGTTTTTACACA
TTATAATTCTAAACGTTCTTTTTTGTTGATACGAACTTTAATTTTTTTTAATACAATACT
TTTTATGTATTCAGTTCGACGCAGCATGGGTTGTAATTTTATGTTATAGGTATATAATTC
CCTTAGACTAAGTTTAAAATTAAACAATTTTAGATGTGTAAGGGATGCTTTATTTTTAAC
TGTGCCTGTTTTTTTTTTTTAATTTGTTGAAAAGTAATTGTTTTTCTAAAATTTTTTTTT
TTGTAAAATTAACATGACGTAAACGACAAAAAATGGTTTTTTTTTTCTTCGTTATTACGA
ATAAAATATCAGTAACTGTACGTCATTATAAAGAATATGTATAAGACATAAAATAATCCA
CTACATAATTAAATAAAAAGTAGAAATTATAATAATGTAATTTACACGATAAAGTGATAT
TTTTCAAAATTGTACTAAATGTAAAAGTTGTATTTTCTTATTACGGTCTGATTTTAATGA
TAAACATTGCGTTTTATCTTTTAATCTGTTTGTAATTTCGGAAGTAACTTTGGTTTCCTT
TTCATCGTATTTAGAATATTTCACGCAGTCTGACACTATCGCGAGAGGTCTGTCTAGCTA
TCGAATTAAGATGTAAATTTAAGATGTGTAAATAAATACACATAATTTGCATGGTTATCA
TAATAGGGCTGTTTGTAAATTCACATTAAAATAAACAGGACTCTATTTGAGTCGTGTATT
ATCAAAGGTGGCAATCTGTG
(3020 bp)

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