SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c5415_g1_i1
Scaffold_idBomo_Chr13
NCBI non-redundant
(nr)		UPF0568_protein_C14orf166_homolog_[Bombyx_mori]
Ontology
GO:0000993 F RNA polymerase II complex binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006388 P tRNA splicing, via endonucleolytic cleavage and ligation
GO:0042802 F identical protein binding
GO:0044822 F RNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048471 C perinuclear region of cytoplasm
GO:0072669 C tRNA-splicing ligase complex
Transcript
Level		FPKM:48.76 TPM:25.36
ORF EntryO_BomoMSG1150_5prime_partial:A_BomoMSG_c5415_g1_i1
Sequence
(Nucleotide)
CTATGCTATCGTCATGTCGAATTGCATTTGGTTAATTTTGTGAAATTTACTACAATTTGC
TATCTAAAAACTTACAGTTTTTTAACAATGTCAAATTTATTTAAATTGAAACTAAGTGCA
TTAGGTCATCCAAATCCAGAGTTCTTTAACTGCGAAGATGAGAAGGAGTACAGAAGTGTG
GTGCTGTGGTTAGAAGATCAAAAAATAAGGCATTACAAAATTGAGGACCGAGAAGGGTTG
AGAAATATTGATTCCGATTTCTGGAAGGAGGCATACAATACGTATCAGAAAGATTTGGTG
AGTCCAGCGGCAGAAGGGACGCTGAATGAACAACTCAATTGGCTATTGTCGTATGCGGTG
CGGTTGGAATACGCGGATAATGTTGACAAATATAAAAATGCTAAAGTTGAAGAGAAAAAG
AAAGCTCCCAATGTCGTGTCTTCTAATCCATTAGACAATCTGGACTTCTCAAGTCAAGCA
TTCAAAGCAGGTGTCAACAGAGTCTGTACAGTAGCGAGCATTGGTCCTCATCCAGATCCT
AAAATAAGACTTGCTGCCTTAGCCAAAGTACTGAAAACTTCTCCGCATCCGGAACCCCTA
CAAACTGAAGTCAATTTAGTTAATCAACCCTCAGATGTGTTAAAGTTACTGTTTGTTCAG
GATCTTAGAAATTTACAAACAAAAATTAATGAAGCTTTAGTTGCTGTCCAAACTGTTACT
GCTGACCCTCGAACTGATACCAAACTCGGTCGAGTAGGAAGATAAAATGTTCTTCACTAA
AATTTTGTAAAATTATCTTAACATTTTCTTCACGAAATCACAATGGCGAAGAACTGAAGC
TATTGTTTTTATACTATGTTATGTAAAACCATATTAAAATGATAATAATTGATCTGCTGA
GTACTAAAAATAAACTGTGCATTAAAAAAAAAAAAA
(936 bp)

- SilkBase 1999-2023 -