SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c26962_g1_i3
Scaffold_idBomo_Chr25
NCBI non-redundant
(nr)		Retrovirus-related_Pol_polyprotein_from_transposon_TNT_1-94_[Papilio_machaon]
Ontology
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
Transcript
Level		FPKM:2.67 TPM:1.39
ORF EntryO_BomoMSG21650_5prime_partial:A_BomoMSG_c26962_g1_i3
Sequence
(Nucleotide)
GGAAAATATATCACTTGGTGGATCAAGGTATTTCATTATTTTTGTTGATGATTATAGTCG
TATGACACAAGTTTATTTTTTAAAAAGTAAAGATGAGGCTTTGCAGAGTTTCATCGATTA
TAAAGCTAAAGTTGAGAATTTATTGTCAAAGAGAATCAAAACTCTAAGAAGTGATAACGG
CACAGAATTTTGTAATAAGAAATTTGAAAGTTATTTAAAGAATTCAGGTATTAATCATCA
AAAAACTAATGCATATACACCAGAACAAAATGGACTCTGTGAGAGGATGAACCGAACAAT
TGTAGAAAAAGCCAAATGTCTCCTCTTTGATGCTAAACTTAGCAAGAACTTCTGGGCAGA
AGCTGTTAACACAGCTGTTTATTTACAAAATAGAATTGTGAAAACTGGATTGAACAACCG
CACGCCATATGAGGTATGGACAGGTACTAAGCCAAACCTGAGTCACTTAAGAATATTCGG
AAGCACTGTTATGAAACACATTCCTAAAGAAAAAAGACAGAAATGGGACAAAAAGTCTGA
ACAATGCATACTTATAGGCTATCCTGAAGATGTTAAGGGATACCGTATATACAATCCTGC
AACACAGAGCATCACAACAAGTCGAGATGTTATATTTATAGAAGAAAATAACTTAGATGA
ACAGAAAATCATTGAAATAAAAGAAGATGATTTAAGTAATAAATCATTGTCACCTTCAGT
GGGAGATTTACCGGACACCAGTAGGGAGGATTCATTTACTTCAGCTGAAAATGCTACTGA
CTTGGATGAAACCTACGTACCATCTTCTGAGGATGAGGAGTCCTTGAAATTAGAAAAAGA
CCTGCTGAGAACATTACCGAAAAGGCACAGAAAGCAACCTGACAGATATGGATATATGTG
TACAGAAGAATGTAACAATCCAGTCAGAGATGAATTGACATTAGAAGAGGCACTGGAAGG
ACCAGAAAAGGAGCACTGGGAACAGGCTATCAAAGAAGAACTGAAAAGTTTTGAAGACAA
CAAGGCATGGGATATTGTTGACGTTCCTGTAAGTGGCAACATTGTAAAGTGCAAGTGGGT
TCTTAAAAAGAAATACGATGCTGAAAATAATGTGCGATATCGAGCGAGACTTGTGGCTAA
AGGTTGTTCACAAAGATATGGTGAGGACTACAGTGAAACTTTCTCTCCTGTGGTGCGGCA
TACAACACTTAGATTATTATTTGCTTTATCAGTGCAGATGAACCTGAAAGTGATTCATCT
TGATGTAAAAACTGCCTTCTTGAATGGAGATCTGTCTGAGACTATATACATGCAAAAACC
TACAGGCTATGTCTGTAAAGATGATAAAAAGGTTCTTAAATTAAACAAAGCTATATATGG
TCTCAAGCAGGCTTCACGAGCATGGTATATGAAGGTTGATGCTTGTATGTTAGCTGATGG
TTATGTTAAATCTAAAATAGAACCATGTTTATATATAAAAAATGTTGGTAACAGTAAAAC
TATTGTAACATTGTATGTGGACGATTTCTTTGTGTTTTCAAATGATGATAGGGAAATGAG
TCATATTAAAAGTACGTTAAGTAAGAACTTTGAGTTAAAAGATTTGGGTGCTGTAAAAGA
ATGTTTGGGGATGTCAGTTACTTTTGACATGAAAAATTGTACTGTTACATTAAGTCAGAA
GAAGTATATTGATAAATTGCTGTCCAAATTCAATATGTCTGATTGTAAAACAATAAATAC
ACCCATGGAGGCCAATTTAAAGAGTAAAAAGGCTGATAACTGTAAAAATCAGAATCCCTA
TCAGCAACTGATTGGGAGTCTAATGTACTTGGTTGTTCTTACTAGACCAGATATAGCTTT
TGCTGTGTCATATTTAAGTCAATTTAATAATTGTAACACTGAAGAGCAGTGGCTTTATGC
TAAAAGAATATTAAGATATTTAAAGAAAACTAAAGATTTAGGTTTAAAATATTATAAAGG
AGAAAATATAAATATTAAAGGTTTTGTAGATGCTGACTGGAGCAATGATATCAATGATAG
AAAATCATACTCAGGTTTTTGTTACATGTTATCGGGATCTGTTATATCTTGGAGTTGTAG
TAAACAAAAATGTATTGCACTTTCCAGTACAGAGGCTGAGTATGTGTCAATTTCTGAAGC
CTGCAAAGAAGCAGTGTATTTGAGAAACTTGCATTATGAAATAACAAAAAGATTGCACAG
AATTGATATTTATAATGATAGTATGAGTGCACAAAAATTATTACTGAATCCAGTTTATCA
TAATAGAACTAAGCATATTGATGTCAGGTATCACTATTGTAGAGACTTGATACAAAGAGA
TATAGTTTGTGTTAATTATTTGTGCACATCAGATATGCCTGCAGACCTACTTACTAAGAG
CTTAGGAGCTGTCAAACATTATAAACACTTAAATAGCTTGGGTATTGTTAAAACATAGGT
ATTATGTTTTTTTTGTTTTGTTTGTTTTGGTATCTATATTTTGAGTGGGAGTGTTGTAAA
TATATCAAAATACAGATGCTACTAGTGACATCTCCTGATACTTAGTTATAATAACTAATC
TGTTTTCATTACATTCGATTTATTAAAGTTCGGTCATTCGCTTCCCGTCACAGTTTGAAT
CACGTTGTTTTATTTTAGCTGCGATCTCGTCCACCCATCTAAGCAATAA
(2689 bp)

- SilkBase 1999-2023 -