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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c26928_g2_i1
Scaffold_idBomo_Chr5
NCBI non-redundant
(nr)		syndecan_isoform_X1_[Bombyx_mori]
Ontology
GO:0004888 F transmembrane signaling receptor activity
GO:0005576 C extracellular region
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:0007427 P epithelial cell migration, open tracheal system
GO:0007517 P muscle organ development
GO:0008045 P motor neuron axon guidance
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0021782 P glial cell development
GO:0030154 P cell differentiation
GO:0031594 C neuromuscular junction
GO:0044246 P regulation of metabolic process
GO:0045202 C synapse
GO:0045887 P positive regulation of synaptic assembly at neuromuscular junction
GO:0050908 P detection of light stimulus involved in visual perception
GO:0097009 P energy homeostasis
GO:0098595 C perivitelline space
GO:2000637 P positive regulation of gene silencing by miRNA
Transcript
Level		FPKM:12.79 TPM:6.65
ORF EntryO_BomoMSG21488_complete:A_BomoMSG_c26928_g2_i1
Sequence
(Nucleotide)
GTGTGCTCTTCCGATCTGTTGGACGCCGCATGCCGGATCACACGCCTATCCGACCGTGTG
CGTGGTGACAGTGTTATAACATAGCTAATTGTTTTGTGCCGTGATATTGTTGTGTTCTTG
TGTAATACTGTTGGTGCGACCGGTCCGGTTCACTGTTGTGATGCATTTGAGGATATGGAT
ATGGCTGTCTTGTGTTGTCCTCGCAGGATACGTTCGAGCGACAGAGGACGCAGCTGTCGC
TGAATCGCCGTCAATCAACTTATCGCTTCCACTGAACGACGGCGTCGCGTCAGACCAGAG
CACGTTCGTCGACGCCGATGAAGGTTCCGGCCTAGAGACAGACGAGAGCTCGGGCTCCGG
TTGGGGAGCCGGCCCCGGGCCCGACGACGAGGACAGCTCAGGTGAAGCGCCCACCGACCA
CGATGAACTACCACCAGACGACGAGGATTACACGACCTCGACCGACGCGGCTCCCACCGA
TGACCACGAGAGGAAACTCATTTCGGACTTCTACGACGAAACCGAAGTAGAAATAGAAAA
AGAGTCCGAACAAACAGATACCCCGATCACCCCGGCCACCCCGGTCACTGAACCTCCGCC
TCTAGAGCCCGAAATACACCCAGAAGTATTTGTTCCTGTGAACAAACCAAGCGGGGGTGA
GGTGGAACCGCACGGCGCGGGGGAGGAGCGACCCTCGCGCCCTGATCAGAACGGCGAAAT
CAACATCTCTGAAGAAGACACCAATCCGGCAATTGACCAGGAGCAGGCGGGCACTAACGT
GGATCCTGATTCGCGGCCGTCAGAAGTGTTCATCATGAACGCCAAGCCGGAAGACAGAGC
GATCAGCTTCTTCGCGCAGCCTGGCATACTCGCCGCTGTGATCGGTGGTGCTGTAGTAGG
GTTATTATGCGCAATCCTTGTGGTCATGTTCATAGTATACCGCATGCGTAAGAAGGATGA
AGGTTCCTATGCCCTCGACGAGCCGAAGAGAAGTCCAGCGGCAGCCTCGTACGGGAAAGG
ACACAACAACCGCGAGTTCTACGCGTGAGACGACTCGGAACAAAACATGCCACGTGCTTA
CTAGTCGGCGCTCTAATCAAGAATGAACACTTCCCACCTGGGCGCCATTTTGATTTTCTT
TTTCTTTTTTCAAATCTACGTTCCGTTTCAGGAATACTTAAATGCGTGTAATTAATTCTT
CATATTTTCCTGCCGTGGCTATTTGTTCTGTGAATCATTCAAACGAAACAAAACCTGACA
ATTTATTAATTGAATTTGACGGTATAATGACGCAACTGTAGGTATATGTACGGATTGTAC
AGTTAAATGTACAAACCAGGTACAAAAATATTTATTTGTCTTGAACGAAGAGATAATATG
GAATTCAATGGATGCATTCGTTTATGTTAAATCATAGAATTATCAATATTGAGACCAATT
TTTTCATAAATTTTGGAATGTGGAAGAATATAAAACATCATTACGTACTCTGTTGTAAGA
CAAATGTGGTTGAGTGTTCTGTCTAGGGTCATACTGTGAATATTTCTCGGTACTCTAGGT
TTCTCTATAATGATAAATAAAAAACGGTTTACATGAAGCCGGAGTTACTTCACTCTTGTA
CTAGATGGCGGTGCTGAGCGTCATTACTAATGTAACTTACAAACGTCAAGACTTTTGATT
ACCCAGAAAGATTCATGCTATGGTTTAAGTGAAACTGCATGTGTTGTTTCTTTTCATAAT
GGCTGTATATTATCATATAAACAATGTGACTTTTATTAAGATTTAACATTAAGATAATTA
AAGTTGACAATTAAAAAAAAAATCTAGTTCATGTAATGTAATAGTTTTAAAGCAACGTTA
AATTCTAATATGTATGAATTGGTAATGCTGAAATTGCATAATACTACCAACATAAGAGTA
CGCGTCAGCTGTCAATTTTTTTTTTTACTACACCGTC
(1957 bp)

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