SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c26922_g1_i3
Scaffold_idBomo_Chr1
NCBI non-redundant
(nr)		E3_ubiquitin-protein_ligase_UHRF1_isoform_X1_[Bombyx_mori]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000790 C chromatin
GO:0000791 C euchromatin
GO:0000792 C heterochromatin
GO:0003677 F DNA binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005657 C replication fork
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007049 P cell cycle
GO:0008270 F zinc ion binding
GO:0010216 P maintenance of DNA methylation
GO:0016567 P protein ubiquitination
GO:0016568 P chromatin organization
GO:0016574 P histone ubiquitination
GO:0016874 F ligase activity
GO:0035064 F methylated histone binding
GO:0042393 F histone binding
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0044729 F hemi-methylated DNA-binding
GO:0046872 F metal ion binding
GO:0051865 P protein autoubiquitination
Transcript
Level		FPKM:7.39 TPM:3.85
ORF EntryO_BomoMSG21457_5prime_partial:A_BomoMSG_c26922_g1_i3
Sequence
(Nucleotide)
TAAAGAGTTTCCTGAAAGGATAGTGCTCTGTGACGAGTGCAACTACGGCTATCACATGAG
CTGTCTCAAACCTCCATTAAAAGATCTTCCCGACGAGGACTGGTATTGCCCTTCTTGTAA
AAGAGATCCTCAGGATGTAGTAGCGCCAGGAGCAGCCAAACAAACCAAGAAAAAAAATGC
TTCACAGAGTAAACGCGATTGGGGCAGAGGAATGGCATGTGTTGGTAAGACGAAAACATG
CGCTATGCCTGCCAACCATTTTGGACCGATCCCTGGCATCGAAGTTGGTATGTGTTGGCG
GTTCAGGATTCAGTTATCCGAGTCTGGCGTGCATCGGCCGCCCGTGTCAGGAATCCACGG
ACGTGACGTAGAAGGCGCTTATAGCATTGTTTTATCCGGTGGATATGAAGATGACGTTGA
CAATGGCAATGAGTTCACGTACACGGGAAGCGGAGGTCGTGATCTATCCGGGAACAAGAG
AACCGCCGAACAGTCGTGTGACCAGACCCTCACTAGAGAGAACAAGGCTTTGGCCAGGAA
CTGCGCTGTTAACCAAATCAAAGAAGACGGTGCTGACGCAGGTGAGAATTGGAAGAACGG
GAAACCGGTCAGAGTTGTGAGATCCTACAAAATGATGAAGCACTTTCCGAAGTACGCGCC
CAGCGAGGGGATCAGATACGACGGTATCTACAAAGTTGTAAAGTACTATCCAGAGAAGGG
TCTGTCTGGCTACAGAGTATGGAAGTATTTACTGCGTAGAGACGATCCCAGTCCAGCGCC
GTGGGAAGCTGGGGCTAAACATTATCCCATTGTGTATCCAGACGGTTATTTGGAAGCCGA
GGCGGAGAAGAAAGCTTTGAAGCAGAAACAAAATACCAAATCGAAAGGAAAAGTGACAAA
GAAGAGGGCGCTGCGAGAGAGCAACCAGTCTGCCGAGTCGGAGTGTGATATCTCCCCTCC
CGCGAAGAAACGGAAAACCGCAAGCGAGAACAAGAGAAAAGGAAAATCATCAAAAACGAA
ATCGACGACAAGCCCAAATGGTAGTATTTTAGAAATGTTCTCACCGAAAAGAAGGAATTC
TGCTAATGGGATGAAACAAGTTAAAAAATCGGAAAGTGTACTTACCAGCGAGGAAAGGGA
CGCAATTAAAGCTGACACGTTGAATAGCAAGTTATGGGGCGAATGTTTGGCTGTGTGCGA
TAGCTGGGGCAAAAAGGAATTTGTTGAATTTGTATCAATGCAGTTCCTCTGTATTATATG
TCAAGAGGTCGCAGCTAGTCCTGTAACGACACCTTGCCTACATAACTTCTGTATGGCGTG
TTTAAAATTGGCCTTCAAAACAACCGGAGCGATTTGTCCGTGCTGCAGACAGAACTTAGC
AAAATATGAACCGGAGCCTAACGAAGAGTTGAAAACCGCACTACGTAGCATCATGACCGG
CTACGACGCTGGAAAGAAGTAATTTTAAAATAATAGACTATGTAAGAGCTAGTAATTTCT
ATGATAAACAAATATTAGGTTCAAATCCATTAGTAATTAGAGTTAAATTTTCTTACCAGA
TTTTACAAAAAAAATGTAAAGTAAAATGTTTATGATTGGCACTCCCTCGGACCGCAGTAG
ACATTTTTTAATATAGCTGGTATAATATATGCTGCGGGAAAAAAAATTCATCACGTTGAG
ATGCTGAATAAAAATGCACTGTAAAATTCACATGAACAGGTTTTTTGAAAACGGTTTTAA
TTTATGGTTATAAAGTTATAGATTTTTACGAATTCAAACAATGTATTCATTTATTTATTA
TTACCAGTTAATTGTTATCTATAATAAAGTGCAC
(1834 bp)

- SilkBase 1999-2023 -