SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c26871_g1_i2
Scaffold_idBomo_Chr24
NCBI non-redundant
(nr)		poly(A)_polymerase_type_3_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0004652 F polynucleotide adenylyltransferase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006378 P mRNA polyadenylation
GO:0006397 P mRNA processing
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0031123 P RNA 3'-end processing
GO:0043631 P RNA polyadenylation
GO:0046872 F metal ion binding
Transcript
Level		FPKM:3.52 TPM:1.83
ORF EntryO_BomoMSG21219_complete:A_BomoMSG_c26871_g1_i2
Sequence
(Nucleotide)
TCTAAAATGGCTGCCTTGTTGTTGGCGACTGTTAGGTGCTTGTTTAGAAATTAGTGTTTA
TTTCGTTCAGTTTGTGTGTGTTTTGTTAATATAGTATACAGTGATGCGCGGATAATAATT
TGAAATTTAATGTCTTGAATCGAAGATTCACCAACGGGAGAGCATTTTAACATCACTCCC
AACTTATTTAGTAATAGTTGAGACCCAGCCAAGATGTCAAAGATGTGGCCTGCGTCCCAA
TATTCTCACACAAACACCCAGCCTATAAAGGCTACGAATGAACACCAGAACCAGCAAAAT
CTGAAGACCTTGGGCATGACCTCTGCAATTTCTACAGCAGGGCCTAAACCAATCGATATA
GAAAAAACGAATGATCTTAAAGTTTCTCTGACACCCTTTGGAGTTTTTGAGTCCGAAGCA
GAGATGCACCATAGGATGGAAGTTCTTGGTGCTTTACATCGTCTGGTGAGGCAATGGATA
AGAGATGAGTCTTTAAGAAAAAACATGCCGCCTAGCGTCGCTGATACTGTCGGTGGAAAT
ATTTATACTTTTGGATCTTATAGACTAGGGGTTCATCATCGCGGTGCCGATATAGACGCA
TTGTGCGTTGCGCCTCGTCATATAGAAAGATGCGACTATTTCTTAACGTTTTATGACCTT
TTAAAGCAACAACCACAGGTTAAAGATTTGCGAGCTGTTGAAGATGCTTTCGTGCCTGTT
ATCAAAATGAATTTTGACGGAATTGAAATTGACTTACTTTTTGCCAGATTAGCCCTCAAG
GAAATACCTGATTCCTTTGATTTGAGAGACGATATGCTGCTTAAGAATCTAGATCAGAAA
TGCGTACGTTCACTGAATGGATGTCGCGTTACCGACGAAATTCTACGTCTCGTACCTAAC
ATAAACAACTTCCGACTGACGCTCAGAGCTATTAAACTGTGGGCCAAACGTCACGGCATT
TACTCAAACACCCTGGGATACCTGGGTGGCGTATCCTGGGCCATGCTAGTCGCCCGAACC
TGTCAGTTGTATCCCAACGCATTGCCTGCCACTCTAGTCCACAAGTTCTTCTTGGTCTTC
AGCCAGTGGAAGTGGCCCCAACCGGTCTTGCTAAAACAGCCCGATCATGTCAACCTAGGT
TTTCCTGTTTGGGATCCAAGGGTGAACGTAGCCGACAGATACCACCTAATGCCCATCATC
ACGCCCGCATACCCTCAGCAGAACTCCACATTTAACGTCTCAGCTTCAACTAGAACAATC
ATCATGGAAGAGTTTAGACTTGGGCTTGCAGTGACCGACGAGATAATGCTCGGCAAATGC
GGCTGGGAGCGTCTATTCGAGGCTCCGAATTTCTTTTCCCGCTACAAACACTTCATAGTG
CTGTTGGCTTCCTCCGCTAGCGCCGACGATCAGCTGCAGTGGTGCGGACTCATTGAAAGC
AAGATACGTCATCTTATCGCTACACTGGAACGCAATCAACATATAACGATAGCTCACGTT
AACCCGGAGTGCTATAATTCAGTGCCGCTGAACACCAATAATGGGCAACCATTAGCCTTA
CCACCCGGGTCAACCATACCCCGCGAGACATCGCCAGAGTTGAACAAAAATGACAAAGGC
GAAGTGGTGGTGAATCATTGTTCGATGTGGTTCATTGGTTTGGTATTCGAGAAGACAAAT
GTAAACGTCGATCTGACTTACGATATCTCTTCGTTCACCAAGGCTGTGCTATACCAGGCT
GAAAATACGAATATGCTGCGAGAGGGACTCACTATTGAGGCTCGTCACGTCCGTCGCAAG
CAGCTGCACCAGTATCTGTCGGCCTCACTGCTGTGCCGCCGCGAGCGCACCGCCTCCGGG
AACAAAAGGAAACCCGACGGTGCTCTCACACACCCGCCCAAGAAGAGTAAACGACTGTCG
GAAAGTAGCACGGACGAAGTCAGCATCTTATCATACAATGACGACTCGAACTCTTCAAAC
CTCTGCGAAGTAAACATCCAGAACGGTTCTGCTAATGGGACGGCGGAGACTCCGAAGGCC
GACGCCTCTACATCTAGTACTATAGCGTGCACATAGCATTACGAAGCCTGGCGCCAGCGG
TTCATTTACGGCACCGATACCGTCAAGACGAACAAACTGAGGCGCTTCTAATTGATAAAG
GACATTACAAACATGAGTGGTACAGTGATATTAAAACTAATAAGTGATGTGATCGTGGTC
TTAGGTAACGAAGCAATAATGTGTTTTGTGATTATCGGAATGGAATCTTTGGTGATTGTC
AGGTGAGTCTTGTTGCTATATCGGGCTCTTCAAAGCTTTGTGTGACTTATCTTTTTTGAG
CCAACAGTATCTTAAAACACATGAAAAGTTTATCGGATCAGACACAATATGAAGACGAAT
AGGCACTGTGGACACGTGAGTTAACTGTATGATTAGCGAATTTATGTGTTAGAAATAAAT
AATTTGTATGTAGTTAAGATGGTATTTTAGATCAAATTTGTCAGTCTTAAGTAGAACAAA
TTTGTACTAAAATGTAACGATTGC
(2544 bp)

- SilkBase 1999-2023 -