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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c26854_g1_i2
Scaffold_idBomo_Chr15
NCBI non-redundant
(nr)		E3_ubiquitin-protein_ligase_TRIP12_isoform_X4_[Bombyx_mori]
Ontology
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0009790 P embryo development
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046966 F thyroid hormone receptor binding
GO:1901315 P negative regulation of histone H2A K63-linked ubiquitination
GO:2000780 P negative regulation of double-strand break repair
Transcript
Level		FPKM:3.84 TPM:2.00
ORF EntryO_BomoMSG21170_complete:A_BomoMSG_c26854_g1_i2
Sequence
(Nucleotide)
GGCGTGTGAAGAGCGACTAGAAAGCGTGTGAAGAGCGACTGCGTTTATTCTTACATGTGT
TTGCTGAGATGCCCATTGAACCTGAAGTAAACGATTGGAAAGAGTCGTTGGGCAGCAGCA
CGGCCTTGTGTGCGCTGGTGGCGAAGGTGAACGCGTGCGTGTCGCATCTCGAGCAGTTTC
CGGTGCGAGTCCACGACCTACCGGCCCGTCCCGCCACGTCCGCTCTTAAATTCTTCAACA
CGCACCAGCTCATGTGTGATCTCAAACGTCATCCTTCGTGCAACACTTTGAAGCAATGGA
AGGGTGGTGTAGTACGAATAGACCCATTAGCTTTAGTTCAAGCCATCGAGAGATACCTGG
CGCAGCGCGGGTACGCCCAGGGCCGCACGCGCTCGGACTCTGCGGGCGCGCACTCGGACG
ACGAGCCCGCCTCCGATGACGACGTCGACGACGCCCTGCCCGCGCCGCCGCAGCCCACCA
ACGATTCTGAACACAAACTCGAGTTCCTGATCGGCGATACAGTGCTGCCGTACAACATGA
CCGTGTACCAGGCGGTGCGACAGTTCGGGGAACAAACGGACGCCGACACGGACACCGAAA
CTCCATTGGCGAACGCGGGGATATGGGTCCAGACACACACGATATATTATCGCGCCGTGG
AGCCAAATGAACAACCGCGTTCCGAAAGCACTCCGTCAAAGAAAGGCAAAGGACAACCCA
CAAAGATCTCATCCCGACGAAAACCTGATTTACTCTGGAACGAGGGCGCGGTGCCGGCGC
GTGCGTCATCGCTGGTGGTGATGGTGCGCGCGGCGCTGCTCACGGAGGGCGACGTGCGGG
ACGCCTCGCTGCCCGCGCTGGGCGTGCTGCGCGCCCTGCACGCCCTGTCGCGCCACTGGC
ACGCGCTCTACCGCGCCGCCTGTCTGCCGGACCACCGCCCTCTCGTGCCGCACGCAGACT
TCATCAATGCTAAGCTCGCCGCCAAAGCCAATAGACAGTTGCAAGATCCATTAGTAATAA
TGACAGGCAATCTACCGCCGTGGCTAAAAAAGATCGCCTACGCATGTCCGTTCGTGTTGC
CGTTCGAGTGTCGGCACTTGTTATTCTACGTGGTGTCTTTCGACCGCGACCGCGCCCTGC
AGCGGCTGCTGGAGGCGGGCGGGGAGCGCGGCGGGACGGCGGGCGGCGAGACGGAGCGCG
TGGCGCCTCGCCTCGACCGACGCAAGCGCACCGTGCAGCGACACAACGTGCTACGCCAGG
CCGAACACGTCATGCACGAGTTCGCGCACACCAAGGCGCTCCTCGAGATTCAGTACGAGA
ACGAAGTCGGCACCGGTCTCGGGCCCACCTTGGAGTTCTACGCGCTGGTCTCGCAAGAAC
TGCAACGCGCGGATCTCGATCTTTGGCACGGCAGCGAAAACTTCAAACAGAAGCCTAGCT
CTTTCGGGGGTGAAATTGTGAAATCGGGCGAAGCGGCGGCCCGCCTCGCTACTTCGGTAC
GCGACGGTTTGAACTTGGACGAAGAACGTACGCGCGCCACTTCACCGACGGACCGTGATA
AAGATGCTCCCGAGCCGGCTGCCTTCGTTTCGTGGCCGTGCGGACTCTTTCCGCAGGCGC
TAGGTCGCAACGCCCGCGCATCTCATCTCTCTCGAGTCAAAGCCAAATTCCGCTTCCTTG
GAAAGTTCATGGCTAAAGCGGTTATGGATTCACGAATGGTGGATATTCCTCTGTCGGTAA
CAATGTACCGATGGGTGGTGAACGAAGAACGTTGGCTAAGCTTGAGCGACGTGCGACACG
TGGCGCCCGAACTGTGGCGTTCTCTGTGTCGTTTACGGCGCGTCGCCGATCGCGCACAAC
ACATCGCAGCCGACACCCGACATACACAGGACCAGAAGAATCAACTTATAAGTAACCTTG
AGCTAGATGGATGTCCGATTGAAGAGCTCGGGCTCGACTTCATATTGCCCGGAGACGGAT
GCACGGAACTGCGTCGGGGTGGCAGAGACATGCCCGTCACTGCGCACAATTTGCAAAATT
ATATTAATCTCGTAACTCATTGGCTACTTTTTGAAGGTGTATCAAAACAGATGGAAGCTT
TCAAAGAAGGATTTGAGTCGGTATTTCCTTTGAGTAACTTAAAAATATTTTATCCTGAAG
AGTTGGAACAAGTGTTTTGCGGAAGTCCTTCAGGTGGTCGTGACCAACGATGGGATCCAC
GTATGCTGGCGGAATGTATTCGTCCGGATCATGGATACAATGCAGAATCGCGGGCTATAC
GCATGCTTATTGATATTTTGGCTTCGTACAACCGTGAAGAACAACGACACTTCTTACAGT
TTGTTACTGGAAGTCCAAGGCTGCCAACTGGTGGATTCAAGGCATTGAATCCACCACTAA
CTGTGGTGCGTAAATCGCTGGAGTCTTCATTGGATCCGGATGAATATTTGCCATCAGTGA
TGACATGTGTCAACTACTTGAAGCTGCCAGACTACAGTAGCGCTGAGGTGATGCGCGCTA
AGCTACGGCTCGCTGCTTCTGAGGGACAACATTCGTTCCACCTTTCATAATTGGCTCCAA
GTTTCCTCTTTTACTGTGATTACATATATCGCCCCCTTTGTATACACGTGTGAATGCGGT
TAGTGATATCTTATTGTAATTTTGTTATAGTCAGCAGTGTATAAGCTCTGGACAAATGTT
TATGTGCAATCAGAACCTATATTTTATAATGTGATGGACACTGAAAGTGCGGCGTTCTTA
GTTTTGTTCATATTTTCGATTCTTTTAGATTACATAGATATGTTTATATCATATTTTGCG
TTAATTTAATGTGATAGCTTTGTATATTTCTTTTTGAATACACCAGAGTGACGCTCTTTA
GATTAGATGTGGCGTGGATGTAGACTGTGGCAAATATAATATATCTAGATGGCTATTTTA
TCTGTTTACAGAAAACATTTCAAATAACTATTGTAACTCACAATTTTCCCAAGAAGTCGA
TTTAAATAATAATTATATATGGTAAAGCTGTAAAAGCTTCAGTAATGTATGTTAGAAATG
TACTGTCACTTGATGGGGTCACTGATGGCCTCTAACTTTATATTGTCCTCCTTGGAGTGT
CCTCTGAATTATATGGCATTTATTACCAAACGGTGTATGTTTTTGATTCAATAAGTATCA
TAAATGAGTAAATGAAAAGTG
(3201 bp)

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