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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c26854_g1_i1
Scaffold_idBomo_Chr15
NCBI non-redundant
(nr)		E3_ubiquitin-protein_ligase_TRIP12_isoform_X4_[Bombyx_mori]
Ontology
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0009790 P embryo development
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046966 F thyroid hormone receptor binding
GO:1901315 P negative regulation of histone H2A K63-linked ubiquitination
GO:2000780 P negative regulation of double-strand break repair
Transcript
Level		FPKM:2.52 TPM:1.31
ORF EntryO_BomoMSG21167_complete:A_BomoMSG_c26854_g1_i1
Sequence
(Nucleotide)
GAGCGCTGGGCGGCGGCGCCGGGGCGCTGGAGCAGCTGGGAGCGCTGGCGGCCGCGCTGC
CGCACGCTGCGCACTCGCGCGCCGCCCTGGCACATCTCCGCGACACGCTGCTGCATCACG
ACGTCTCGCCCTTCGAGGTGAACCATTCCGGAGTATTGGGCGCCCTGCACCAATACCTAA
CTGGCTTCGATATGGAAGTGGATGGTTTGGAAAAGCGCGACGGCGATGGCGAAGGACAGG
AGTCCGCTGATTTGGTGCAAGCGTGTGAAGAGCGACTGCGTTTATTCTTACATGTGTTTG
CTGAGATGCCCATTGAACCTGAAGTAAACGATTGGAAAGAGTCGTTGGGCAGCAGCACGG
CCTTGTGTGCGCTGGTGGCGAAGGTGAACGCGTGCGTGTCGCATCTCGAGCAGTTTCCGG
TGCGAGTCCACGACCTACCGGCCCGTCCCGCCACGTCCGCTCTTAAATTCTTCAACACGC
ACCAGCTCATGTGTGATCTCAAACGTCATCCTTCGTGCAACACTTTGAAGCAATGGAAGG
GTGGTGTAGTACGAATAGACCCATTAGCTTTAGTTCAAGCCATCGAGAGATACCTGGCGC
AGCGCGGGTACGCCCAGGGCCGCACGCGCTCGGACTCTGCGGGCGCGCACTCGGACGACG
AGCCCGCCTCCGATGACGACGTCGACGACGCCCTGCCCGCGCCGCCGCAGCCCACCAACG
ATTCTGAACACAAACTCGAGTTCCTGATCGGCGATACAGTGCTGCCGTACAACATGACCG
TGTACCAGGCGGTGCGACAGTTCGGGGAACAAACGGACGCCGACACGGACACCGAAACTC
CATTGGCGAACGCGGGGATATGGGTCCAGACACACACGATATATTATCGCGCCGTGGAGC
CAAATGAACAACCGCGTTCCGAAAGCACTCCGTCAAAGAAAGGCAAAGGACAACCCACAA
AGATCTCATCCCGACGAAAACCTGATTTACTCTGGAACGAGGGCGCGGTGCCGGCGCGTG
CGTCATCGCTGGTGGTGATGGTGCGCGCGGCGCTGCTCACGGAGGGCGACGTGCGGGACG
CCTCGCTGCCCGCGCTGGGCGTGCTGCGCGCCCTGCACGCCCTGTCGCGCCACTGGCACG
CGCTCTACCGCGCCGCCTGTCTGCCGGACCACCGCCCTCTCGTGCCGCACGCAGACTTCA
TCAATGCTAAGCTCGCCGCCAAAGCCAATAGACAGTTGCAAGATCCATTAGTAATAATGA
CAGGCAATCTACCGCCGTGGCTAAAAAAGATCGCCTACGCATGTCCGTTCGTGTTGCCGT
TCGAGTGTCGGCACTTGTTATTCTACGTGGTGTCTTTCGACCGCGACCGCGCCCTGCAGC
GGCTGCTGGAGGCGGGCGGGGAGCGCGGCGGGACGGCGGGCGGCGAGACGGAGCGCGTGG
CGCCTCGCCTCGACCGACGCAAGCGCACCGTGCAGCGACACAACGTGCTACGCCAGGCCG
AACACGTCATGCACGAGTTCGCGCACACCAAGGCGCTCCTCGAGATTCAGTACGAGAACG
AAGTCGGCACCGGTCTCGGGCCCACCTTGGAGTTCTACGCGCTGGTCTCGCAAGAACTGC
AACGCGCGGATCTCGATCTTTGGCACGGCAGCGAAAACTTCAAACAGAAGCCTAGCTCTT
TCGGGGGTGAAATTGTGAAATCGGGCGAAGCGGCGGCCCGCCTCGCTACTTCGGTACGCG
ACGGTTTGAACTTGGACGAAGAACGTACGCGCGCCACTTCACCGACGGACCGTGATAAAG
ATGCTCCCGAGCCGGCTGCCTTCGTTTCGTGGCCGTGCGGACTCTTTCCGCAGGCGCTAG
GTCGCAACGCCCGCGCATCTCATCTCTCTCGAGTCAAAGCCAAATTCCGCTTCCTTGGAA
AGTTCATGGCTAAAGCGGTTATGGATTCACGAATGGTGGATATTCCTCTGTCGGTAACAA
TGTACCGATGGGTGGTGAACGAAGAACGTTGGCTAAGCTTGAGCGACGTGCGACACGTGG
CGCCCGAACTGTGGCGTTCTCTGTGTCGTTTACGGCGCGTCGCCGATCGCGCACAACACA
TCGCAGCCGACACCCGACATACACAGGACCAGAAGAATCAACTTATAAGTAACCTTGAGC
TAGATGGATGTCCGATTGAAGAGCTCGGGCTCGACTTCATATTGCCCGGAGACGGATGCA
CGGAACTGCGTCGGGGTGGCAGAGACATGCCCGTCACTGCGCACAATTTGCAAAATTATA
TTAATCTCGTAACTCATTGGCTACTTTTTGAAGGTGTATCAAAACAGATGGAAGCTTTCA
AAGAAGGATTTGAGTCGGTATTTCCTTTGAGTAACTTAAAAATATTTTATCCTGAAGAGT
TGGAACAAGTGTTTTGCGGAAGTCCTTCAGGTGGTCGTGACCAACGATGGGATCCACGTA
TGCTGGCGGAATGTATTCGTCCGGATCATGGATACAATGCAGAATCGCGGGCTATACGCA
TGCTTATTGATATTTTGGCTTCGTACAACCGTGAAGAACAACGACACTTCTTACAGTTTG
TTACTGGAAGTCCAAGGCTGCCAACTGGTGGATTCAAGGCATTGAATCCACCACTAACTG
TGGTGCGTAAATCGCTGGAGTCTTCATTGGATCCGGATGAATATTTGCCATCAGTGATGA
CATGTGTCAACTACTTGAAGCTGCCAGACTACAGTAGCGCTGAGGTGATGCGCGCTAAGC
TACGGCTCGCTGCTTCTGAGGGACAACATTCGTTCCACCTTTCATAATTGGCTCCAAGTT
TCCTCTTTTACTGTGATTACATATATCGCCCCCTTTGTATACACGTGTGAATGCGGTTAG
TGATATCTTATTGTAATTTTGTTATAGTCAGCAGTGTATAAGCTCTGGACAAATGTTTAT
GTGCAATCAGAACCTATATTTTATAATGTGATGGACACTGAAAGTGCGGCGTTCTTAGTT
TTGTTCATATTTTCGATTCTTTTAGATTACATAGATATGTTTATATCATATTTTGCGTTA
ATTTAATGTGATAGCTTTGTATATTTCTTTTTGAATACACCAGAGTGACGCTCTTTAGAT
TAGATGTGGCGTGGATGTAGACTGTGGCAAATATAATATATCTAGATGGCTATTTTATCT
GTTTACAGAAAACATTTCAAATAACTATTGTAACTCACAATTTTCCCAAGAAGTCGATTT
AAATAATAATTATATATGGTAAAGCTGTAAAAGCTTCAGTAATGTATGTTAGAAATGTAC
TGTCACTTGATGGGGTCACTGATGGCCTCTAACTTTATATTGTCCTCCTTGGAGTGTCCT
CTGAATTATATGGCATTTATTACCAAACGGTGTATGTTTTTGATTCAATAAGTATCATAA
ATGAGTAAATGAAAAGTG
(3438 bp)

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