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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c26768_g1_i6
Scaffold_idBomo_Chr1
NCBI non-redundant
(nr)		basement_membrane-specific_heparan_sulfate_proteoglycan_core_protein-like_isoform_X2_[Bombyx_mori]
Ontology
GO:0001523 P retinoid metabolic process
GO:0001525 P angiogenesis
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005604 C basement membrane
GO:0005615 C extracellular space
GO:0005796 C Golgi lumen
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0006024 P glycosaminoglycan biosynthetic process
GO:0006027 P glycosaminoglycan catabolic process
GO:0008022 F protein C-terminus binding
GO:0022617 P extracellular matrix disassembly
GO:0030198 P extracellular matrix organization
GO:0030203 P glycosaminoglycan metabolic process
GO:0031012 C extracellular matrix
GO:0042157 P lipoprotein metabolic process
GO:0043202 C lysosomal lumen
GO:0044267 P cellular protein metabolic process
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
Transcript
Level		FPKM:5.81 TPM:3.02
ORF EntryO_BomoMSG20801_complete:A_BomoMSG_c26768_g1_i6
Sequence
(Nucleotide)
GTGCTCTTCCGATCTCTTGGCCATCTCAGGAGAAGCTAACAGTGTCTCCGACATCTCTCT
CAATTGACGAGGGCCAAAGTTCTAGGGCTGTCTGTACTGGCACACAAGGCGTTCCGGCCG
GCTCCATTGAGTGGATCAGGCAAGACAATGCTCCGTTCGTGGCAAACGTGCGGTCCGATA
ACGGGGTATTGTACATCGAATACGCTCGACCCGAGAACGATGGCATCTATGTCTGCCAGA
GCTCATCGTCGAATGTCTCGCCGCAATCGATTATCATAACAATCATACCGACATACAGTC
CTGACCCCGCCAAAGAGTCGAACATCAGCATTTCGGTCGACAGCTTGAAGGTACCGGCTG
GTGGAAGCGGAAAGATCGACTGTAATCCTGACGGAACAATTCTACCTACCATCAAATGGA
GCAAGCACGGCGGAGAATTCGGAAGCGAAACAAGCCAACGCGGCAACACTCTCATAATCA
ACAACGCCAAAGAGGACGATCAAGGATACTATCTGTGCGAGGGAATCGTTAACGGCGCCA
CCATAGCCAGCTCATACGTCTACGTCGAGATCGAAAGACGTGACCCTCCGCAAGTGGACA
TCTGGCCCCAAGGCGAGAGAGCAGTCACTCTGGGCACAGAATACGAACTCATCTGCAGAG
TTCTTGGTGGAGTCCCTGAGCCTGACGTCATGTGGAGTCGAGGTGGAAGTAGACCGCTGT
CCTCGTACGTCCACATCCGTCCGCAAAATACGCTCAAGTTTGACCACGTCGACGTGAACG
ACGAAGGCGAATACTTCTGCACGGCTACGAACGTGGCCGGTACAGCCACGGCTCGTTCCG
TCATCAAAGTGAGATCGCCGCCGGTCATCACCATCACGCCGGCGAGCTTCCTAGAGGCAC
CTCTCGGTAGTTCCGTGACAGTCGAATGCAGAGCCGACGGGTATCCCCTACCAATGGTGT
CCATAAAGACAAGCGCTGATCTCCGCGAGCTGGTGCGGCCCACACCCAGCTTAGCAGCAT
TGAAGATACCGTCGATAGCTGAGCGCGACGACGGCGACTACATTTGCACGGCCACTTCTG
CGGCCGGCACCATCGAGGAGCCGTTCGCGATACGCGTCAGCCGCGGAGACATTGGAGTCG
AATACGAATTTGGTGGAAGCGGCGATGACGAGTTCCCCGTTGACTACAACCCGAACAACC
CGACCGGGAGATCAGACACGTTGATCGCTTATGAAAACGAACCAGAAATAACCATCTTCT
GCAACAGCTCCGAGGGCTTCAACGCACGCTGGGACCGAGGAGACAGACAGTCACTGCAAA
GAAATGCGTACCAAGTTGATTCACGTTTGATCATCCGTGGTGTATCCAAGAGCGACTCCG
GCTTGTACGTTTGTAGTTTGTACAACCGCTACACCGGAGAGGTGGTGAAGGCGAACTACA
CTAATCTCCAAGTCGTGACCCGACCTAAGATAACGTTGAGGCCGGCCAACCAAACGGTCC
GACCTGGTCAGTCGCTCACGGTCGAGTGTCTCGTCGAAGGAGATGAAATTCTAGACGTCA
CTTGGAGATACGACAGGGAGCCTTCTAGACGTGTCGAAATCCGTGGCCCAGTTCTGGTCT
TTAACAACATCGAAGTGGAAGATGCCGGCATATACTATTGCATAGCTCGCAGCCGTTACG
GAAACGACACCGCCACCGCCAATGTCATCGTAACCGAAAATACCGATCGTCCGACCGTGG
AATCTCACAATAACGAACAGTACGCGCATTCCGGAGCCGCCGTCCACCTGGGCTGTAACG
TCTCGCAGCCCAACTTGAGGATATACTGGACTAAGGACGGTCGTCCCGTCCCGAGGTCGC
GCCAGAAGACCGACGGCTCACTGTTCATCAAAGTAGCCCAGAAATCGGACAGCGGCCGTT
ACGAATGCTTCGTCCGAGACCAATACGGAAGGAGATCTAGCAATTACGTCAACTTGCACA
TCGAGGGAGCACGCGACGCAAATTCTGCTTCGCTGGTGTACATCGATCAGCCACGCAGAA
AGTTCAGGGTTTCGGAGAACGTCGAAGTTATCTGTAAGGGAAGATCTCGAGATGTCACCT
TTAAGTGGGAGCGTCCCGACACCAACTTGTACCTGGTTACTAATCCGTTCGGAGGCGGTT
CTCGGCTGCTGATAAACAGCGTCCAAGAGTCCGACGCCGGCGTATATCGCTGCATCGGTA
CAGATCCATTCGGCATCTCCTCGTACGACGATTTCGTTTTGGAGATCGAACCAGGTTCTG
GCAACGCCGTCTATCCCGGCAACAGAGACCTGCCCGTCACCCATTACTCAGCTCGGCTTC
GCGAGGCCGTCGACATGCCCTGCAACCACGACCTAAACGAGCCAGTCATTATCGAATGGA
AACGAGAATATTCGCCGCTTCCCGCTGAAGTTCGAAGCAATCAGCCAATCCTACACTTGG
AAAGCGTGACAGAAGCGGATGCCGGCATCTACGTCTGCCGCGTCAGCAACCAAGAAGTAA
CAGTTACAGCGAAGGCGATCCTTAGGGTGATCGGTGTGGTTCCACTCTTCAAAGGCAAGA
GTTGGTTATCACTTCCACCTCTGAAAGACGCCTACAGACAATTCGACATTGAAGTCTACT
TCAAACCCACCGATCTGAACGGCCTGATCCTGTACAACAGCCAAAATCAGGGTAGAACCG
GTGACTACATCGGTCTAAGGTTATTGGATGGAGTACCAGAGTTCATATTCGACGCTGGTG
CCGAACCTGTCATCGTCAAAGGCGATAGACCATTGCAATTGAACGTCTGGCATTCAATAA
GAGTCAGCAGGACCGATTCGAAGGTGACAATGGACGTCGACGATACAGGACCGTTCATAA
CTGATTCGGAAGAGCCTTGGTCGGCCGTGCTGGAACTCAACCAGCCAATGTACATTGGAG
GAGTTCCTGATATTGACCAACTACCAGCTGGACTTGCAGGATCCGATGGGTTCATCGGAT
GCGTGAGCACTCTGATCCTCGGCCACGATGAGAAGAATATCATGCTCGACAGCTTGGAAC
AATACGGCGTCGACGAATGTCGGTCTTGCACTCCCAACCTTTGCGTCAATGACGGAATCT
GTCAGGAGGCGCGTAATGAACGCGGCTACATGTGCATCTGCGCTCCTGGCTTCGCCGGCT
GGAATTGCGAGAGAACCGGGGAAGCTTGCAGAGCCGGCCTATGTGGACCTGGGAAATGCA
CCGAAACAGTGGACGGTTACAGGTGTGCTTGTCCCATGTCTCACACAGGCAAGAACTGCG
AGACGAAGCAACTGATCGCGTACCCAGCTTTCACGGGGAGCGCATTCCTAGCTATCAACG
CCCCGCCGCCGTCCCGTTCCATGAAGATGTCGCTAAAGATCAGGGCAGCCACTCCAGTGA
CAGACGGCATCATCATGTACTGCGCCGAGTCGTCGCGAGGATACGGCGGCTTCACCTCAC
TGACCGTTCGAAATGGAAGACTTGAGTTCCGTTACGACCTTGGATCCGGAAGCACTCCCG
TGGTGCTTACAAGTGACAGGCCATTGCCCGCGAACCAATGGATCGACATTCAGATCGCCC
GCCTCGCGGATTCCGTCTCCATGAAGATCAACTTAGTACGCAGCTTCGAGAGACGTTTGG
ATAGACCGGCTGAAAGCCTCCGGTTCGAGACTCCGATGTTCGTGGGCGGAGTCGACGATT
CCACCGTGGTAGTGAACCCTAACGCCGGCGTCAGCGGCGGCTTCAGCGGATGCATTAAGG
ATGTCGTGTTGAATAGCAACGCCGTCGACATAAACTCATCGATTAAGTCGTCGAACATTC
AAGAGTGCAACACGTACGACCGCGGCGATATTCAGGCGTCGGAGTCCTGCCAATGCGAAA
ACGGAGGTTCCTGTTCGACTGAATCCACCAATTGCATATGCCCACCCGGCTATACGGGAT
CGTACTGCGAGACGCGCATCGCATCCTACCTGATGTCGCCACCTCCGCCGGTAAACCCTT
GCTCTCTGCACCCGTGTCGCAACGGAGGAACCTGCAAACCAGATCGCAACTCTTGGATGA
ACCACACCTGCGACTGCCCCTTGGGTTATGCCGGAGCCTCGTGTCAGATGCCTCTCGAAT
TAGGCCAGAGCGTGGGCTTCAACGGCAACGGGTATGTAGAGTTGCCGGCCAGTTTGCTTC
GCTATGATGAACTGGCCTCGAACCCCGCTGTCATCGCCCTCGCTGTGCACACCACAAACG
ACGGAGTACTGGCCTACCAGAGGGAAGGACAAGCTCCGCCTAACGAAGGCGATTACTTCT
TATTGAGAATTGAAAGAGGTTTCGTCGTACTCGAATGGGACTTGGGCGGTGGTCTTTCTT
CCATAGTTGTCGATGTTCCTATTAACGACGGCGAGAGGCACCAGGTCGCCGCTCGTCTGC
ACGAGGACGGACACGCCTGGCTCTCCGTCGACGGAGTTGACAAGAGCGCGCCGGCCACCG
GTATCTCCAACGTCATGAACGCTGACTCCAACATATACATCGGTGGAATACCAAGCTGGT
TGAACATCCACGGATATCCAGGCTTCATCGGTTGCATTGAGAATGTTGAGACAACGGACA
GCCACCGAGGATTGAATTTGCGAGACACCGCTGTGGCTGGTCGAAACACGCAGCTATGCA
GAGACTCCTGATTTGAGTTCATCGAAACGAAAACTACGAAATAATTAAGTAAAAAATCTC
TACGCTTTCATAAAACTGGAATGCATCGTATATTTTAAATATTATAATCTCATGATTACG
C
(4801 bp)

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