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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c26768_g1_i5
Scaffold_idBomo_Chr1
NCBI non-redundant
(nr)		basement_membrane-specific_heparan_sulfate_proteoglycan_core_protein-like_isoform_X4_[Bombyx_mori]
Ontology
GO:0001523 P retinoid metabolic process
GO:0001525 P angiogenesis
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005604 C basement membrane
GO:0005615 C extracellular space
GO:0005796 C Golgi lumen
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0006024 P glycosaminoglycan biosynthetic process
GO:0006027 P glycosaminoglycan catabolic process
GO:0008022 F protein C-terminus binding
GO:0022617 P extracellular matrix disassembly
GO:0030198 P extracellular matrix organization
GO:0030203 P glycosaminoglycan metabolic process
GO:0031012 C extracellular matrix
GO:0042157 P lipoprotein metabolic process
GO:0043202 C lysosomal lumen
GO:0044267 P cellular protein metabolic process
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
Transcript
Level		FPKM:6.89 TPM:3.58
ORF EntryO_BomoMSG20796_complete:A_BomoMSG_c26768_g1_i5
Sequence
(Nucleotide)
TCCTTATGGTGGCCAGTCTGGTGGTGAATATGATCCTTATGGCCGGGGTGCTGGTAGTCC
AGATGATAGACGTCCTCCATACGGTCAATCTGGAAGCCAAGACATCAGTCTTGGAGGTGG
AATACCATACAACCCCGAATCAGTAAGGCAACCAGACAACAGAGATCCCTATGGCGGCCA
ATCCGGTGGTGAATATGATCCCTATGGGCGGGGCGTAAGTGGAACAGACGACAGACGTCA
ACCTGGAAGCCAAGATGTTGGTCCAGGAGCTTCGGGTCAAGGCAATTCAAATCAACCAGA
AAACCGGCCCTATCGTCCTGAAAGTGGCAATAGCGTTTATGAGACGGGTGAGGGGCAATA
TGGATCTGGTAGTCAAAGAGGAGACAGAGGTCCCATTCCGTTAAATATCAAAACATATCC
GCAAGACCAGGAATCTGTCAGATACGGTGGTGATGTAGTGCTTCAGTGCCGTGATGAAGG
CCCTCGTCGTGCACCCGTGAGATGGATCCGAGAAGGTGGTAGGCCGATGAGGCCAAACTA
CCAGGAAAGAAAAGGACGACTGGAACTGTTTGGTGTTACCCCATCCGATAGTGGTGTATA
CATATGTCAGGCACCATCTTATCTGAGACAGCCTGGTGCGGAAGTTCGAGTTACTTTGGA
AGTGGAGACGAGCCCTGTGACCGTGCGGCCAGTGTTCGGTGTTTGTAAGCCACATGAAGC
CACTTGCGGTAACGGGCAGTGCATACCAAAATCGGCTATTTGCAACTCTGTTTTCGACTG
CGCTGATCATTCAGACGAAGATGGCTGCGGAGCCAGTGGCCAGTGCGAACCGAACGAGTT
TGTTTGCGCGAACCACAAGTGCATTCTTAAGACCTGGCGTTGTGACTCCGAGGACGACTG
CGGCGATGGTTCTGATGAACTTAACTGTGGAACCCCAACTCCTGGAAGCCCTTGCTTGGC
GGTAGAATTCTCATGTGCTTCTAACAACCAATGTATTCCGAAGAGCTTCCACTGTGACGG
ACAATCTGACTGCGTTGATGGCTCTGATGAAATCGGATGCGCTCAAGTATATATCACGAA
ACCCCCGCAACCTTCATACGTGAGATTGAATCCGGGCGACTCGTTGACTCTAAGATGTGA
GGCCGTTGGTGTACCTGTTCCACTAGTCTCGTGGCGTCTCAACTGGGGACATGTTCCACC
TCAATGCACCTTTACCAGTGACAACGGTATCGGAGTTTTGACATGTCCAAACATGCAGCC
CCAACATAGCGGTGCGTATTCGTGCGAGGCCATCAATAATAAGGCTACGACATTCGCGAC
ACCGGACGCAATCGTACACGTGAATAGAACCGATCCTTGCCCCGTTGGATATTTCAATAG
CGATGCGCGTTCACAAAGCGAATGCATCCAGTGCTTCTGCTTCGGCGAGTCCACGCAGTG
TCGCAGCGCGGATCTGTTTACGTACAACATGCCGACTCCTCTTGGAGAAGGCGGCACCAG
ATTCGTCACTGTCACTCATCAGGCCAGAGGCGACATCAGTATCGGCGCCCCGATGAACAA
CGAATACTTCTATCAACCTTTGAGGAACGGAGCTACTGTGACCAGAATAGTCCCCGGAGA
CATGGGCTGGTTCAAAGATGCTCATCCATACGTGACCTTACCAGAAACCTACAACGGTAA
CCAGTTAACTTCATACGGTGGTCACATCAAATACACCATCTCGCCTCACGGATCCGGATA
TGGCTCAGATGACACTGCACCAACCATAATCATCAAGGGGAAATACTTCACTCTGTTCCA
TTACTACCGCGGCGAGACGACTAAAACTATCAACATCGAAGCTCGTTTGACTCCCGAGAA
CTGGCTGATTCTGGACGAAAACGGCGTTCAAGCGCCAGCGCAGAGATCGACCATCATGAT
GACATTGGATAACGTTGAAATGATACTCCTACGCGCTGATCTGCACAATGCGGGCGTGAA
CATCACAAACTTCGCAATGGAATCCGCGCAGCACATCAATGTTGGACTCGGTGCTGCGAG
TCTGGTTGAAGAGTGTACTTGCCCGCCTGGATACGAAGGACTTTCATGCGAGAAATGCGC
TGTTGGCTATACCCGTGATCAATCTGGGGAATGGTTGGGTACTTGCGTCCGCGAGACCTG
CCCGCCAGGTACTTACGGAGACCCAAGTAGCGGATATGCCTGCAAGCCTTGCCCTTGCCC
ATTGACCAACAGGGAAAACAACTTCGCCTCCACTTGCGCACTGGGACCTGACGGCACTGT
TCTCTGCAATTGCCGACCGGGCTACGAAGGCAGCAACTGTAATATCTGTTCGTCTAACTA
CGAAGGAAATCCTCTCATGCCCGGAGACTCGTGTAAGCCTAAAGCTACCAAGAAATGCAA
CCCCGCCGGTACAAAGCAGGTTCGATTCCCTGACGAGTGTGCGTGCAAGGTCAACGTACA
AGGACGTCATTGTGACCAGTGCAAGAACGATTCATTCTATTTGTCTGAAGACTTCAGTCA
CGGATGCGCTCTCTGCTTCTGCATGGGCGTGACCCAGCAATGTACAAGCAGCAACCTAAG
ACGTACAACCACTGCCGTTCAATTCAACGTGCCCAACATTGTGAACCAAGTCAGGATTTA
CAACAGTTCAGCTGGTAGAGCACTCCAGGCTGTACGGTACAGTGTGCCGGTTGAAACTGA
AATGAGACCTCGGATCTACAGCGGCAGTATAGATGTACCGATACCGGCAGTCCGGGACAA
CGTTTACTACTGGAGCTTACCAAACGGTTTCACCGGTGACTTGGTGACGGCCTACGGTGG
TTACTTGAGGTACACTTTGGATAACGTTCCGATATCACTAAACAGCGCTCCGGACGTACA
GCTCATCAGTAACACGAACCCTACATTCCATTACACTGGCAACTTCGTTCCATCATACGA
CGGAACCCTAAACGTTTCGATACACCTTCTAGAAACCGGTTGGAAAAGGTTTGACGGCAT
AGAAATACCTCGAGAGCACTTCTTAGTGGCTTTAGTTGATGTTAAAGCCATTCTTATAAA
GGCTACGTATTCCCAAGACTCACCAATGGCCATTCCGATTAGTGCTAGTATCGATAAGGC
TGATCCTAATGGGGAGGGACCGGCCGCTCTACACGTCGAACAATGTGTTTGTCCACCAGC
TTATACTGGGACATCTTGTGAAACCTGCGCTCCTGGTTACACTAGGGGTGATCGAACTAT
ATACTTGAAAGAATGCATACCTTGCAACTGTAACGGTCATTCGAATATGTGTAATCCAAA
GACAGGGGTCTGTTACGACTGCAAGGATAACACGGATGGTCCCCAGTGCGAACTCTGCAA
GCCTGGATACGACAGAGACGGCTACGGCAACTGCGTTGAATCCGATAACTTCATCAGCAC
CCAGCAACCTTGCAGATGCAATCCTGACGGCGTCGAAGTACCATGTGACGAGACTGGTAC
CTGTTCTTGCAAGCAGAACGTCGAAGGCGATTACTGTGACACCTGCAGACCTGGAACCTA
CGGGCTGGATCGAAACAACCCTCAGGGATGTCTCTCGTGTTATTGTTCCGGCGTCACCAG
CGAATGTCACGAGGGCGTCCACTACAGTAGAATACCGATGGCCGCACCAGTTTTCGGCGA
AAACAACGGCGGCTACAGCCTCACCGACTTAAACGCAGAAAAAATATACAACGAACATTT
CGTACCAGTTCCCGATAAAAGCGAGCTCATGTACATATTCTCGTACCCACCCGAAAACGA
ACTGTATTGGTCGTTGCCCATCTTCCCTGGTAACAGAGTACTGTCATACGGTGGTTCGCT
GTCGATAAGACAAGAGTTCCGAAGCAACAACGACGATGCGGTCTCACAGAGTGGCGTCGA
CGTTGTTCTTGTCGGCAAAGACGCTTCGGTGTACTGGTCCAACCCGACTCCGATCCGATC
CGGCGTGCCTCTTAATTACCAGGTGATTTTGAGCGAAGACAACTGGTTCCTATTGAACAC
GGCCACGCCGGTCACTCGAAACACCTTCATGAATGTCCTGAAGGACCTGAAGCGAGTGCT
TGTTCGTGCTACTCTCGATCCCAACGTACTGTCGACATCTATCGCTGACGTGTCCATGGA
CACTGCCACTATCATGTACGAACAAGATTTGCCTGTTGCAAAGGGAGTCGAAATCTGCAT
GTGTCCAGCCGGATACACTGGCACCAGCTGCGAGAGTTGCTCGTCTGGTTACTACAAGGA
CGTGTCTGGTCGGTGCCAACAGTGCTCATGTAACGGCCACGACTGTCAACTCGACGCTTA
CGGACAGACTATATGTAACTGCCGCCCCCCTTACACCGGCTCTGATTGTTCTACCATCGC
CGGTGAGCCCTCGGTGACTACACCGCCTAATCAACCGCCGCCCGAAGTAACGGTGTTCGT
GAGAATCATTGAGCCCTCGAACATAAGGGACCTGCACGTCGGTAGCAGTGTCAACTACAC
TTGCCAGGCTCAGAGTCGCATTACGAACAGACTCCGCATCGCGTGGTCCAAGGCTGATGG
CTACTTGCCTCAAGGAAGGTCGCAGGTCGACGAAAACAGTGGTGTCTTGCTCCTCACTAA
CCTTCAGACATCCGATAGCGGCCAGTACATCTGTCAGACAAGCGACGGATACTCAACGGC
TCAAGATGTCGTCACTCTTATAGTGCCCGGTAATGATATGACCCCGCCCACGGTATCGAT
TCGTCCCATCACAACTGACTACTATGAAGGTGATAGGATCGAACTAGAATGCACGGCAAC
AGGAAACCCAGCTCCTTCTATCTCATGGCAGAGGAACTCTAGAAGACCTTTGCCGGCGTC
CGCTGAATCGTTCGATGACCTCTTGATAATTGAAAGTGCACGCCAAGAGGACTCTGGAGA
ATACAGGTGTATCGCTTCGAACGCAGTCAGTACAGAAGTTACTAAAGTCACGATCAATGT
ACGTGCAAAACCATCTTGGCCATCTCAGGAGAAGCTAACAGTGTCTCCGACATCTCTCTC
AATTGACGAGGGCCAAAGTTCTAGGGCTGTCTGTACTGGCACACAAGGCGTTCCGGCCGG
CTCCATTGAGTGGATCAGGCAAGACAATGCTCCGTTCGTGGCAAACGTGCGGTCCGATAA
CGGGGTATTGTACATCGAATACGCTCGACCCGAGAACGATGGCATCTATGTCTGCCAGAG
CTCATCGTCGAATGTCTCGCCGCAATCGATTATCATAACAATCATACCGACATACAGTCC
TGACCCCGCCAAAGAGTCGAACATCAGCATTTCGGTCGACAGCTTGAAGGTACCGGCTGG
TGGAAGCGGAAAGATCGACTGTAATCCTGACGGAACAATTCTACCTACCATCAAATGGAG
CAAGCACGGCGGAGAATTCGGAAGCGAAACAAGCCAACGCGGCAACACTCTCATAATCAA
CAACGCCAAAGAGGACGATCAAGGATACTATCTGTGCGAGGGAATCGTTAACGGCGCCAC
CATAGCCAGCTCATACGTCTACGTCGAGATCGAAAGACGTGACCCTCCGCAAGTGGACAT
CTGGCCCCAAGGCGAGAGAGCAGTCACTCTGGGCACAGAATACGAACTCATCTGCAGAGT
TCTTGGTGGAGTCCCTGAGCCTGACGTCATGTGGAGTCGAGGTGGAAGTAGACCGCTGTC
CTCGTACGTCCACATCCGTCCGCAAAATACGCTCAAGTTTGACCACGTCGACGTGAACGA
CGAAGGCGAATACTTCTGCACGGCTACGAACGTGGCCGGTACAGCCACGGCTCGTTCCGT
CATCAAAGTGAGATCGCCGCCGGTCATCACCATCACGCCGGCGAGCTTCCTAGAGGCACC
TCTCGGTAGTTCCGTGACAGTCGAATGCAGAGCCGACGGGTATCCCCTACCAATGGTGTC
CATAAAGACAAGCGCTGATCTCCGCGAGCTGGTGCGGCCCACACCCAGCTTAGCAGCATT
GAAGATACCGTCGATAGCTGAGCGCGACGACGGCGACTACATTTGCACGGCCACTTCTGC
GGCCGGCACCATCGAGGAGCCGTTCGCGATACGCGTCAGCCGCGGAGACATTGGAGTCGA
ATACGAATTTGGTGGAAGCGGCGATGACGAGTTCCCCGTTGACTACAACCCGAACAACCC
GACCGGGAGATCAGACACGTTGATCGCTTATGAAAACGAACCAGAAATAACCATCTTCTG
CAACAGCTCCGAGGGCTTCAACGCACGCTGGGACCGAGGAGACAGACAGTCACTGCAAAG
AAATGCGTACCAAGTTGATTCACGTTTGATCATCCGTGGTGTATCCAAGAGCGACTCCGG
CTTGTACGTTTGTAGTTTGTACAACCGCTACACCGGAGAGGTGGTGAAGGCGAACTACAC
TAATCTCCAAGTCGTGACCCGACCTAAGATAACGTTGAGGCCGGCCAACCAAACGGTCCG
ACCTGGTCAGTCGCTCACGGTCGAGTGTCTCGTCGAAGGAGATGAAATTCTAGACGTCAC
TTGGAGATACGACAGGGAGCCTTCTAGACGTGTCGAAATCCGTGGCCCAGTTCTGGTCTT
TAACAACATCGAAGTGGAAGATGCCGGCATATACTATTGCATAGCTCGCAGCCGTTACGG
AAACGACACCGCCACCGCCAATGTCATCGTAACCGGAGCACGCGACGCAAATTCTGCTTC
GCTGGTGTACATCGATCAGCCACGCAGAAAGTTCAGGGTTTCGGAGAACGTCGAAGTTAT
CTGTAAGGGAAGATCTCGAGATGTCACCTTTAAGTGGGAGCGTCCCGACACCAACTTGTA
CCTGGTTACTAATCCGTTCGGAGGCGGTTCTCGGCTGCTGATAAACAGCGTCCAAGAGTC
CGACGCCGGCGTATATCGCTGCATCGGTACAGATCCATTCGGCATCTCCTCGTACGACGA
TTTCGTTTTGGAGATCGAACCAGGTTCTGGCAACGCCGTCTATCCCGGCAACAGAGACCT
GCCCGTCACCCATTACTCAGCTCGGCTTCGCGAGGCCGTCGACATGCCCTGCAACCACGA
CCTAAACGAGCCAGTCATTATCGAATGGAAACGAGAATATTCGCCGCTTCCCGCTGAAGT
TCGAAGCAATCAGCCAATCCTACACTTGGAAAGCGTGACAGAAGCGGATGCCGGCATCTA
CGTCTGCCGCGTCAGCAACCAAGAAGTAACAGTTACAGCGAAGGCGATCCTTAGGGTGAT
CGGTGTGGTTCCACTCTTCAAAGGCAAGAGTTGGTTATCACTTCCACCTCTGAAAGACGC
CTACAGACAATTCGACATTGAAGTCTACTTCAAACCCACCGATCTGAACGGCCTGATCCT
GTACAACAGCCAAAATCAGGGTAGAACCGGTGACTACATCGGTCTAAGGTTATTGGATGG
AGTACCAGAGTTCATATTCGACGCTGGTGCCGAACCTGTCATCGTCAAAGGCGATAGACC
ATTGCAATTGAACGTCTGGCATTCAATAAGAGTCAGCAGGACCGATTCGAAGGTGACAAT
GGACGTCGACGATACAGGACCGTTCATAACTGATTCGGAAGAGCCTTGGTCGGCCGTGCT
GGAACTCAACCAGCCAATGTACATTGGAGGAGTTCCTGATATTGACCAACTACCAGCTGG
ACTTGCAGGATCCGATGGGTTCATCGGATGCGTGAGCACTCTGATCCTCGGCCACGATGA
GAAGAATATCATGCTCGACAGCTTGGAACAATACGGCGTCGACGAATGTCGGTCTTGCAC
TCCCAACCTTTGCGTCAATGACGGAATCTGTCAGGAGGCGCGTAATGAACGCGGCTACAT
GTGCATCTGCGCTCCTGGCTTCGCCGGCTGGAATTGCGAGAGAACCGGGGAAGCTTGCAG
AGCCGGCCTATGTGGACCTGGGAAATGCACCGAAACAGTGGACGGTTACAGGTGTGCTTG
TCCCATGTCTCACACAGGCAAGAACTGCGAGACGAAGCAACTGATCGCGTACCCAGCTTT
CACGGGGAGCGCATTCCTAGCTATCAACGCCCCGCCGCCGTCCCGTTCCATGAAGATGTC
GCTAAAGATCAGGGCAGCCACTCCAGTGACAGACGGCATCATCATGTACTGCGCCGAGTC
GTCGCGAGGATACGGCGGCTTCACCTCACTGACCGTTCGAAATGGAAGACTTGAGTTCCG
TTACGACCTTGGATCCGGAAGCACTCCCGTGGTGCTTACAAGTGACAGGCCATTGCCCGC
GAACCAATGGATCGACATTCAGATCGCCCGCCTCGCGGATTCCGTCTCCATGAAGATCAA
CTTAGTACGCAGCTTCGAGAGACGTTTGGATAGACCGGCTGAAAGCCTCCGGTTCGAGAC
TCCGATGTTCGTGGGCGGAGTCGACGATTCCACCGTGGTAGTGAACCCTAACGCCGGCGT
CAGCGGCGGCTTCAGCGGATGCATTAAGGATGTCGTGTTGAATAGCAACGCCGTCGACAT
AAACTCATCGATTAAGTCGTCGAACATTCAAGAGTGCAACACGTACGACCGCGGCGATAT
TCAGGCGTCGGAGTCCTGCCAATGCGAAAACGGAGGTTCCTGTTCGACTGAATCCACCAA
TTGCATATGCCCACCCGGCTATACGGGATCGTACTGCGAGACGCGCATCGCATCCTACCT
GATGTCGCCACCTCCGCCGGTAAACCCTTGCTCTCTGCACCCGTGTCGCAACGGAGGAAC
CTGCAAACCAGATCGCAACTCTTGGATGAACCACACCTGCGACTGCCCCTTGGGTTATGC
CGGAGCCTCGTGTCAGATGCCTCTCGAATTAGGCCAGAGCGTGGGCTTCAACGGCAACGG
GTATGTAGAGTTGCCGGCCAGTTTGCTTCGCTATGATGAACTGGCCTCGAACCCCGCTGT
CATCGCCCTCGCTGTGCACACCACAAACGACGGAGTACTGGCCTACCAGAGGGAAGGACA
AGCTCCGCCTAACGAAGGCGATTACTTCTTATTGAGAATTGAAAGAGGTTTCGTCGTACT
CGAATGGGACTTGGGCGGTGGTCTTTCTTCCATAGTTGTCGATGTTCCTATTAACGACGG
CGAGAGGCACCAGGTCGCCGCTCGTCTGCACGAGGACGGACACGCCTGGCTCTCCGTCGA
CGGAGTTGACAAGAGCGCGCCGGCCACCGGTATCTCCAACGTCATGAACGCTGACTCCAA
CATATACATCGGTGGAATACCAAGCTGGTTGAACATCCACGGATATCCAGGCTTCATCGG
TTGCATTGAGAATGTTGAGACAACGGACAGCCACCGAGGATTGAATTTGCGAGACACCGC
TGTGGCTGGTCGAAACACGCAGCTATGCAGAGACTCCTGATTTGAGTTCATCGAAACGAA
AACTACGAAATAATTAAGTAAAAAATCTCTACGCTTTCATAAAACTGGAATGCATCGTAT
ATTTTAAATATTATAATCTCATGATTACGC
(9510 bp)

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