SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c26568_g1_i4
Scaffold_idBomo_Chr3
NCBI non-redundant
(nr)		ATP-dependent_RNA_helicase_DHX36_isoform_X2_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000781 C chromosome, telomeric region
GO:0001047 F core promoter sequence-specific DNA binding
GO:0001503 P ossification
GO:0002151 F G-quadruplex RNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006396 P RNA processing
GO:0008026 F helicase activity
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0009615 P response to virus
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
GO:0032206 P positive regulation of telomere maintenance
GO:0042826 F histone deacetylase binding
GO:0043330 P response to exogenous dsRNA
GO:0044212 F transcription cis-regulatory region binding
GO:0044822 F RNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051880 F G-quadruplex DNA binding
GO:0070062 C extracellular exosome
Transcript
Level		FPKM:6.57 TPM:3.42
ORF EntryO_BomoMSG19991_3prime_partial:A_BomoMSG_c26568_g1_i4
Sequence
(Nucleotide)
GTTGCAAGAAGTAAGCAGGATAATGAGCTCTAATGCATAAAAAACATTTAATTTTCCACG
GAATTATAAATATTTTTTTTAAAATGCCTCGGAGATATAATTCTTTTGATAGGTTTGATA
GGCCACGACCACCGAAATCGGGTCTAAGAGGCAAAGAAATTGGAATGTATTATAAAGCTT
TAAGTATTGAAAAAGGAAAGAAAAATAAGAAAAACAATGTGATACGCTTCAAAATTCCAC
CAAGCATTGTCTCATCACTGTATAGTAATTTAGCATCAATAGAAAAGCTTGCTAAAGGAC
TGAACATTTGCATAAAACCAATAGAAAAATTGACTATTGCAGAAACACCAAAAGGCTTAA
AACCTGAACTGTCATTACATGAAGCGATGTACATGAACACGAGTACAGCTGAAAACAAAA
ACAGTGTGCAGGCAAGTGATAATGAAAATCTATTTGAAGCAAAAACACCACTAACTGATT
TTAAAAAGCTAGAAGATATTTCAATGATATCTGAAGATGCTGAATTACGTTCACCAAGCG
ATGTTGACAACAAATCAAATGGTATACCTGTTTTTGGAAGTATCCAAAAAGAAATAGATG
CTACTGCAATATGTTCACCAGATAAAAAAAACAAAATTTTGGAAACTGATAATGATGTTT
TAATGACCCCAGGGCCATCTAAGGATTTTATTTCAGTAAAGGATGAAACTGTGGAAATCA
AATTAGAGAACCGTTTTTTATCACTTAGAAGTTCAGTTAACTATAAATATGGCTACGAAG
ATATCATAACTGGGACGTTTGATGAAAAATTAGATGAATGCTTGGCAAGAGGAATCAACA
TTAATATTAAGAATGAAGTAAATAATGATCTCAGTTTTGCAATGATAGAAGAATACAATG
ATATGTTGAGCAAAGATGGTTATAAATTGCACATGAAATTTCGTGACAAGCTACCTACAT
ACCAAAAATATGAAGAGCTCTTAAACATGATCAACAATAATCAAGTTTTGGTCATAAGTG
GAGAAACAGGATGTGGCAAATCGACACAGGTACCTCAAATAATTCTTGATGATGCCATTA
TTAACAAAAGAGGTGCAAATGTGAAGATTCTAGTAACTCAACCCAGGAGAATCGCAGCTT
CATCATTAGCTATGAGAGTGGCTGAAGAGAGAAATGAGAAACTAGGGAATAGTGTGGGAT
ATGCTGTTAGATTGGAGAAGGTTGATCCAAGGCCTCTAGGAAGCATTATGTTTTGTACCA
CAGGTATACTACTGACTGAACTTGAAGTTAATCAAAGTTTGTCTAACTATAGCCATATTA
TCCTCGATGAAGTGCATGAAAGGGACAGATCGGAAGAGCG
(1360 bp)

- SilkBase 1999-2023 -