SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c26526_g2_i2
Scaffold_idBomo_Chr12
NCBI non-redundant
(nr)		PREDICTED:_splicing_factor_U2af_38_kDa_subunit,_partial_[Amyelois_transitella]
Ontology
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005686 C U2 snRNP
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0008187 F poly-pyrimidine tract binding
GO:0008380 P RNA splicing
GO:0010906 P regulation of glucose metabolic process
GO:0046872 F metal ion binding
GO:0071011 C precatalytic spliceosome
GO:0089701 C U2AF complex
Transcript
Level		FPKM:9.56 TPM:4.97
ORF EntryO_BomoMSG19814_complete:A_BomoMSG_c26526_g2_i2
Sequence
(Nucleotide)
ATTTTCGCGAAGCATGCTGTCGTCAGTATGAGATGGGAGAATGCACCCGAAGTGGATTTT
GCAACTTCATGCATCTGAAACCTATTTCAAGAGAACTGAGAAGATACCTGTATTCCCGTC
GCAAGAGCGGTCGTCGTTCCCGGTCCCGTTCCCGCGAGAGACGGCGCCGCTCCCGCTCCC
GCGAGCGACGCCGCGAGCCGCCACGCACCTCGCGCTCCGGCCGCTACTGACCGCTGCTCA
CCACTACTCACCACCACTCACCACAGCCTCCGCTACAAGCTCGGTAGCTCGGTACCAGCA
TTTACATATGATTCCCATGTTAAGTCTCAAACCGGTATGCGGAGAACTAACGTTGATGTT
TATCATCAAGTAACGATACACTTCTGTTGTATAATTTGAGTGTAGTACGTCTGCATATTT
GATATTTGAAAAAATATAAATTAATGTTCCGCATATCTGTCCGCGAATTTTACACGATTT
GTGAGCACGTGTGTTAGTGCGACCGTTCCGTAAACATCCGCATAGTGCCTCAATACATTA
CGATTATCATTTTAGTAATACATAGGAAGACGCATCTCGCATCGTTATAAAATTATTTTT
TCTATATAAAGTAAGTAAGTGGTATCTTTTCACTATCGTGTCTTTCTATCTGTATTGAGT
TAATTGATTAATATCAAGCAGTCTGTGAGCTCATCTGTTGATGTGCATAAAGAAATATAA
ACAATACGTATTAATATTCCTTAATATTTTAAGAGAATTCTTTTGTGGAGAGTGATTTCA
CTGTCACATTAATTATGACATTATAACTGTCACATATTTATATAACGACCATCCATGTTT
TTGTTTATTTACATTTTATTGCATAGTTGGGTGGACGAGTCCACGGCCCACCTGATGTTA
AAGGGTTACCGGAGCCCATAGACATCT
(927 bp)

- SilkBase 1999-2023 -