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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c26451_g1_i2
Scaffold_idBomo_Chr17
NCBI non-redundant
(nr)		uncharacterized_protein_LOC101735977_isoform_X1_[Bombyx_mori]
Ontology
GO:0000213 F tRNA-intron endonuclease activity
GO:0000214 C tRNA-intron endonuclease complex
GO:0000379 P tRNA-type intron splice site recognition and cleavage
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006388 P tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006397 P mRNA processing
GO:0008033 P tRNA processing
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
Transcript
Level		FPKM:5.16 TPM:2.68
ORF EntryO_BomoMSG19505_complete:A_BomoMSG_c26451_g1_i2
Sequence
(Nucleotide)
CGTCGCTCAGTAGATTAGGATGTAAAGTCTACAGACATGTTGTTAATAAGAAAGAAAAAA
CAAATTCTAATGAAGATAAATTAGGAAATACGATAACAAATAAAGATACTGATGTTAGTA
GTGAAAGTAACATGGAAATTGATTATGGTATTACTGAAATTGGTACTCGAACTACTGAAA
GACATGCTAACAAAAAAATTGATGATGGATCTGAGATATCAAATAAAAATAGTGAAAACA
ATGCCTATGATGAAGTACAGTCCAATGATAATGAAAGTATTGCTACCAGCAGCCAAGAAA
TTGATAACACTCACATTGTAGATTGTGAAAGCGATGATGAACTTACTGTTGTTATTGAAA
ATGATTCTTCCAAACAAAACAACAAAAATACAGATGTTGAAGAGTTGACACGTAAAGAAG
TTCCTGGTAAAAACACTCACAGTATTGTTACAGACGTGTCAGCTGAAGGCGCTGGTAGCA
CTCGCGAATCGAATGACGAAACCGAACAAAATTTAAACGAGATGAAGCTACGAAAGCTTT
TGGAACGTAAATACAAATCCACTAATGCCAATGCACTCGAAATTAATTTCAAAAAGATAC
CGGACTTTTATCAGAAAACGTTTGCGACCGTGAAGGCGCCCGAAGAACAGTTCATACCTA
AGAACATATATGTAAATAAAACGTCATACGTGCTCAACGTTGAGAACCTTAAAACTAAAG
ACATTAGAAATACGTCGAGCAACTTATCTTACACATCCTCCGATGAACCAAACGAGTCGC
TTAAGAGCATCGGGAACGGTTCGCGTAACGAAATACCCGCCGCGACGCATTTCTACCCGA
ACACGAGCACACCAAGAATGACCAATCAATACAGACCTTACAACTGGTGGAGGCCGCGCG
GGAACTTCAACTACTTTCATTTTAACATGTTCTTTCAGAGGCCATACTTTCCTCAGTATT
TCGTACCGAGGTTTCAGTTCCAACCGAGGGTGCATCCGGTTTTCAGATCATACCCGGACA
TGAGGAACGCCCACACGAACGTTGAAAACGCACAAGGCACGAGGAACTCCCGGAAACGAC
CACGCGACACACGGATGTACCATTTGCAAATAATCAAGAACCTCGCCGGGAGGCTGAAGA
GGCTGATCGCTTCGGGGAATCTGCAGATATCAAATATACAGTCCATACAAAAAGTCATAC
AGACTTACAACCACAGTTACAAGTGTAAATTGACCCTCACCGATAACTTTGATCTCGTTG
ACGAGACGGTCGTTATTGAAACTATTGAATTGGATACCGAGGAAGAATCTCAAAATAAAA
GGCAAAGAGTCAACGAAGACACCTTCACGGAAAACTTCAACAAGCTCAAAGAGCTAGCGT
TGAAGTTGAAAGATTTGAACGAGAAAGACCAAGTCACGTCTCGGCACCGAAGGGCATTTT
CGAACGCCATTAAAACTTTCAACAAGTCTTTCAACGCAGACATATACATGAACAGCAACT
ACGACATGATCGACCGGAGGCAAGTGGTACTGGACACGAGCTCCGACTCCGAAGACGCAT
TGAATCAACCAAATGCGTTCACCAAGAAATTGAAGAATCCATTTAATATTATAAAGCGTT
TTAACGAAATTCGCAACGTGCAATGTACGATCGATAAGGACAACAACGGTGAACCGGAGT
CGGATATTGTAAAACCATACGACACAAAACATCGGAGACCAGACGAACTCAGTAAGCACT
GGTATCCGAGTGATGATGATTTCGGTCGAGCGGAAGTCGTCCGACGCGACAACGCACGCA
TTACAGACATTTTCAACAACGGCTACATCTACAGTCTCATATCGGAGTGCCCGAATAAGT
ACGAAAGCTGGTTAGAAATTAAAATAGCTTTCTTAAAATGTATCGAAATCACCAATAAAC
ACTATAAGAATCAAATTCCGTCAACTAGCGCTGACACGTCTGCTCTGCAGCCCCTAGTGA
AGCCAGGTGACTTCTCCGACTTGCCGAAGATGTTGGAGAAATTGCAAATAATAACCGCAG
ACACTCACATTCCAGAGGAGACCAGCCTCCGAATAGATTTTGATGTTTACAACAGAAGTA
TAAAGAGTTTTAGAAAAAGCAACAAGCCAAAGCCAGATTTCCGTTTGAGCTGTATCGACG
AATCATGTTGCCTTCCATCAGCAGCGGATGTCTCAGCTCTAATATCGAAATACGAAGACG
ATGTACCGACAATATTCGCCGTTGTAGGCCTAGGCAGTATCTCATATGTACAAATAAAGC
CAATCGTATTACCAGTGTATATGCCTAACGAATAATGTAAATAAAATTCCTTTTATATTG
AAAAAAAAAA
(2350 bp)

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