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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c26437_g1_i1
Scaffold_idBomo_Chr21
NCBI non-redundant
(nr)		m7GpppN-mRNA_hydrolase_[Bombyx_mori]
Ontology
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000290 P deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006402 P mRNA catabolic process
GO:0016442 C RISC complex
GO:0016787 F hydrolase activity
GO:0016896 F exoribonuclease activity, producing 5'-phosphomonoesters
GO:0030054 C cell junction
GO:0030145 F manganese ion binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0043488 P regulation of mRNA stability
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0046872 F metal ion binding
GO:0050072 F m7G(5')pppN diphosphatase activity
GO:0071044 P histone mRNA catabolic process
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
Transcript
Level		FPKM:0.66 TPM:0.34
ORF EntryO_BomoMSG19436_internal:A_BomoMSG_c26437_g1_i1
Sequence
(Nucleotide)
GTGCTCTTCCGATCTGCAATTTAATCAATAAAAACGATTACATAGAAGCCGTAACACACG
ACCAAATCGCTCGTTTGTACATTATTGGAAATATTCCCAGAGACACAAAGTTCCAACCTC
GCACACGAAACGAGATCAAAGCGTGCGAATGGTTCCCATTGGCGGATTTACCGGCCAATA
AAAAAGACATGACGCCCAAAGTCAAAATGGGGGTTAGCCCTAATGCGTTCTTCATGGTCC
TACCTTTCGTCAAACGAATGAGACGATGGGTTGCCGAACGCAGCTCCAAGGTATTCACGA
ACAGTCGTCGAACTCGTCACAAATCGATGGGAGATTTAGAAGCTTCAACGAGCCAGAATA
AAAACAAGACCATATCGCAGGGACTGCAAAACGAGATAAATGAATACCAACAAAATTCTG
GTCACAAAAATGATTATCAGAATCATGGAAGCAATACAAAAAATGTTAATGGTAATAAAA
ATGGTGGCAATGGTAACAAAAATGGTGCTAATGGCAATAATAGTGCAAGGAAGGAAAAGA
AGGCTGCTAAAAGACAGTTGTTCACGCCACAGAACATCCAGTCGAATAATATTTCACCGG
TACAAAAGGAAGACAGTGTTGCCGAGGCTAAAATAGATGAAAGCAAATTAAGCAATTTCA
TTGCTCCATCTTGGAGATCG
(680 bp)

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