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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c26409_g1_i1
Scaffold_idBomo_Chr18
NCBI non-redundant
(nr)		protein_Smaug_[Bombyx_mori]
Ontology
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000900 F translation repressor activity, mRNA regulatory element binding
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0007275 P multicellular organism development
GO:0017022 F myosin binding
GO:0017148 P negative regulation of translation
GO:0030371 F translation repressor activity
GO:0043488 P regulation of mRNA stability
GO:0051236 P establishment of RNA localization
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
Transcript
Level		FPKM:0.99 TPM:0.52
ORF EntryO_BomoMSG19314_complete:A_BomoMSG_c26409_g1_i1
Sequence
(Nucleotide)
TTTTGATAACTAGTCGAGTCTCTGAAACAAGTCCATGTTTTCCAATCTACCTGCATTTAA
AATAAAAAATATCACCCAAAAACTACACACCGACAACCGTGAAAAGTTCGTTTTACCTAC
TCCATGTGGAAGTTTGTCGCGGTATCGAGGAATTCGTGCTCAAGGATCAGCTGTCACTCA
CCATTGACGTGTAGATTACAAACAAATCTTGAGATTGGGCTGCTATGGTGTTGTCGCAAT
GAACGGCACGTTTTATGAGCAGCTGGGGGGTGTAACAGGGGTATTCGAGCAGTGGGGTGC
ATGCGAAAAGACTGTGACAGCCTGTGTGCTCGCCAGACGGGTCCCTTGGCCAGGACTAAG
ATTAGTGCAGCGGGCCGTAGAGGCTGCACTTAGGAATCATGTGGAAGACGAACGACTCCA
GAGAGACGCGAATGACGAGGCTTTGCTGACGAGCCTCCTCACTACAAGAGGGGACGATGA
AGATGACGACGGTGGTGATAGACTATATCAACTCTTAACATTATTACCTCTACTGAACAC
AGACAACGAACGTGTTAAAGACATTTACATGAATGCTATGCCAGTGTTAGTTCAAAGGTG
TGTAGATTCCCCACGAAGAACATCGCTGGCTCCAGAATTATGCAGACAGCTGTTGTCTTA
CATGCTGGTGCATCCTGCATTAACACATCATGATCAGAGGACATTAACACAGTGGCTGCG
TTACTTAGAGAATCACATATCCGGTAACAGAAATACAGAAAGCGTTTGGCAACAACGGAT
AGACCCCTGTCTCCTTCCTGACACCAATATATGGAGTACAAACAACTCATTCAGAAGAAC
GATAGGCAAAAATGTTGAATTTCGATGTATTTTAGATCCTTTGGATCAATTCAACAATGA
TTTACTTCAAGAATCATTCTCTAAGAATGGTCGTGATGTTGATTTAAATTTAGACGGAGA
CAAATTGTTATTTGAGGCAGCAATAGCCCAACCAAAGTCTCAAAGATCAAATAGTTTAAC
TCCACCTTCAACGAATTTTCTTCAAATGTCCTCGTCAGCTGAGAATTTGAGTGATGAGCC
TTTTGTTCAGAAACCGAGAAGTTTCTCCCTCTCCAGCGAGCACAGCTTGAGCCAAATCAG
GCCCATTAGTATAATGTATGGGACAACGGGCAGCGAAACTCGCTTAGATGATCTAAGATC
GAATAACTTCACTGAACACCCTGGAATGTCGACTGTTGCTCAGTGGTTGAAAAGTCTAAG
GTTGCATAAGTATGTGTGGCTATTCACAAATATAAGCTATGATCAGATGATGGCAATGGA
TGAAAAGTACTTGGAGAAGCTGGGAGTGACGAAAGGCGCTCGACATAAACTGCTCCTGTC
AATAAAGAAGTTGAACGAGCGACCCTCCGTGATGGAAGCGATAGAGACAGAGCTGCAGGG
CACTCCGGGGACTGCGGTCGTGGGGCGAGCTCTGGAGAGGCTTCGGGGAGTGTTGCTCAG
CCCGATGCCACCTTCAACTGAACTTCCAGGCTCCATTGTCAGGGCCTTGCAACTTGGTAA
CTTTTTTTGCAATAAAGTCTTGAAGTTTTCTACTTCTATTTACTCAATGTAATGTTAATT
ATACAGATGCAGTGTAGTGTATTAATG
(1647 bp)

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