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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c26294_g1_i1
Scaffold_idBomo_Chr3
NCBI non-redundant
(nr)		tRNA-splicing_endonuclease_subunit_Sen2_[Bombyx_mori]
Ontology
GO:0000213 F tRNA-intron endonuclease activity
GO:0000214 C tRNA-intron endonuclease complex
GO:0000379 P tRNA-type intron splice site recognition and cleavage
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0005634 C nucleus
GO:0006388 P tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006397 P mRNA processing
GO:0008033 P tRNA processing
GO:0016829 F lyase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
Transcript
Level		FPKM:10.38 TPM:5.40
ORF EntryO_BomoMSG18938_3prime_partial:A_BomoMSG_c26294_g1_i1
Sequence
(Nucleotide)
TAGATTATACACTTAATATATTTACATAAATAAAGTCAAATTATATAAATGTAATACATG
TGCAAGATTGATTTTTACTCACGGTTGTACTTTTCCTCTTGGTTTTCTCGCCGTTTAACA
TGAGAACCCATAACGAAATAAAAAAAAAATATAAATACAAAACACTACTTTGGCTTCCCT
ATCAATTACTTTAGTTACATATTATAATGTTAAAAAAATTGTTGTAGAAACATATTTTGC
GTTATTGACGCGTGGAATCGTGACATTCGGCTGTAAATAAAATTTGGGAACTGGCCAGTT
CTTTTGTCATGACTGCTTTACAATCAGAAAATTGTCAAACTAATGACTTAAATGACTTAT
TTCCGATGTCTATTGAATCGTTGCGGTTTTCATTAGATAACTCGATACAAATTATATTTA
CTGGGTACTACAATGGTTACAATGTTGAAGTGAGGTCACCTGAAGAAATTACTCTTTTGT
ATCACATGGGCTGTTTTGGGAAGGGATCTGCCTCGAGGTCACGACCCGCACTTGTAAACA
GTGATCGTTATCCAGAAATAATAAGGAAAAGGCAATATTTACAAAGGAACAATTGGTACA
AAAAATTTGGTGATAGTGGGTGTACACTGGTTTCAAGTACTCTTTTGAAAGAATTAGATG
AGTTGACGACCAAAATTGTCAGTGATGGTGAAAAGTTAAAGAAAAAAGATATAATAGATC
TAGTATCCAGCGATGAAGAGTTTAGTCATGATGATGTAGACACAGAGAATGCTGTCAATC
AATCTTTTTCTAGTAGCGAAAAAGATGAAATTACAGTAGTAATACCTAATAGTGATTCTG
AAGAAGAAAATTATTTTGCGGCACTAAAGCCACAATGCTGTGTAAATAAAATTAAAATGC
AAGAAAAATTAATATTAACTCCAGAAGAAGCATTCTTCTTAGCTTATGGACTTGGAAGTT
TACAAGTAGTATACAATAATAATATTTTAGATTTAGAACAGTGTTGGACATTACTTTGTT
CTAATGATAGACATTTTGTGGACAGATATGTAGTTTATCATTATTTTAGATCAAAAGGAT
ATGTTGTGAAACCAGGGATCAAGTTTGGAGGAGACTTTTTACTGTACAAAGATGGCCCTG
GCATAAGACATGCAGACTATATCATTGTTATAAAGTCTGATACAAAACAAGACGACTTAA
TTACTATTCTCGGTCATGTAAGAGTAGCC
(1229 bp)

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