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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c26226_g1_i4
Scaffold_idBomo_Chr17
NCBI non-redundant
(nr)		pol_polyprotein_[Lasius_niger]
Ontology
GO:0000166 F nucleotide binding
GO:0000943 C retrotransposon nucleocapsid
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019076 P viral release from host cell
GO:0032197 P transposition, RNA-mediated
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
Transcript
Level		FPKM:3.82 TPM:1.99
ORF EntryO_BomoMSG18755_5prime_partial:A_BomoMSG_c26226_g1_i4
Sequence
(Nucleotide)
GGCTTTATCTTGAGATAGCAAAATTAAATGACTTATTTATGTACTTGAATGATATTCGTG
AATGTGTTTAAAGTAAAAGTTATATAAATTACATTATAGTAGGAGTTTTATGAAGAAGAA
AAAAACACGAATGATTAGATTTAAGGATAGGTACCGCGACGCTCAACCAATTTGTACCTT
CTTATATCTCTACGGTTTAATTGTTGTCGTATTTAAAGGCTTTGTATTCACGAGCGAACG
AAAATTAAACCAAACTAGAAAACAAGCTTTAGAATTTTGTCACTCTACATGACATCAAAA
CTCCTTTATTTCCTATTGAAAAATTGACTCTCTTTTCAAAACCAGAGCATCATGCCTGAC
AAAACTCTGGTAGTTACTCATTCAGCAGACATTATGAAACCTCATTCTGGTGCATCGTCG
GTCCCTAGCAGTAGTGTGATCATCCTATTTTTGAAGCTCTCATCCCATTCCCCTATTTAT
TTTAGGGTCTGGTCATCACATATTTCTGTGTCATCAATCTTACAGTAGCTTTTACTCCTG
GATGACTCAACCCGTGAATATTATCGAACGCTTGTTTACGAAACTGTGACGTCAGATAAA
GTCGAGGAGAAGGGCTACGAGTATCACAATATAAGCTCTCACCCGAACCAGAAATGTTGA
TTTTCTGCAGGTCAAGTGAAGAGCCGCATTCTAGCAGTTTTTGAAGTTCTTGGTCGTCTT
TTTGCGAAGATGCTAAAGCATGCATATCAAGCTCACTCGTAATTGCTTCTGTGCGGGAAA
GAGCGTCTGCCACTACGTTATCGTCTCCTGAAATATGTCGTACATCGGTTGTAAATTGTG
ACACAAAATCAAAATAGCGAAATTGCCGCGGAGAACAGTTTTCTGATGCTTTTTTGAATG
CTGAGACTATTGGTTTGTGATCTGTAAGCACAGTGAAAACTCTGCCTTCCACCATATGTC
TAAAGTGCTTTACTGCTTCATAGATAGCTAACAACTCTCTATCGAATGGGCTATACTTTC
TTTGAGCTTTATTCAATTTTTTTGAAAAGAATCCGAGTGGTTGCTGTCCTTCATCTGTCT
TTTGCTGTAGTACGGCACCGATTGCATTATCAGAAGCATCCGTACAGAGTATCAAAGCTG
CCGATGGGTTAGGATGAGCTAGCAATGTCGCTTCAGCTAAACTTTTCTTACAAGCGATAA
AGGCTTCCAGCAGGTCAGCTGACCAGGTAATAGGCGTACGGGGTTTTAAAGCTGGGCCGG
ATAAAACATTATGGAGCGGAGCTTGGATATTTGCAGCTTTAGGCATGAAACGTCTATAGA
AATTAACCATACCCAGAAATCTTCGTAATTCTTTAATAGTTTTCGGCTGCGGGAAGTTCT
GGATCGCCTCCACTTTCTGAAGAAGCGGTCTGGTGCCCGAAGATGATACGGCGTAGCCTA
AAAAATCTACCTGGGGCTCACCAAACACGCATTTCGAAACATTAATAACAACGCCGTGGT
CCTGGAGACGTTGAAATACTTTCTTCAGATGTTCCAGGTGCAATGTCTCGTTCTGGCTCC
CTATTAAAATATCATCGATATAAGGATAACAAAAGTCAAGGTCTCTCAAGATTTCATCCA
TGAAGCGTTGAAATGTTTGAGCTGCGTTGCAAAGACCAAAGCTCATAAACGGAAATTCAA
ATAATCCGAAAGGAGTCGTAACAGCTGTTTTCGCTATATCTGCTGGGTTTACCGGTAATT
GATTATAAGCTCGGATCAAATCGATTTTGCTGAAGACGGTACACCCAAATAGGTTATGTG
AAAAGTCACCTATATGTCGGACCGGGTATCGGTCAGGTATTGTACGTGCATTTAATGCCC
GATAGTCGCCACACACGCGCCACTCATTGTTTTTCTTCGGAACTAAGTGTAATGGCGATG
ACCATGGACTGTCTGATCTTACTGCAATACCTGCTCTTACCATATCCTCGAACTCACGGG
TGGCTATTCGGAGTCGATCCGGTGCTAGACGACGAGGACGACTGAATACTGGTGGCCCTG
GAGTGGTACGGATGTGGTGAAACGTATTATGTTTAATTTTACGCTTAGACAGGTCCCCAG
CCGGACGAGTGATGTCCGGAAACTGAGAAAGCAAATCATGATAGCGTGAAGTACCTGCAA
CAGACTTAATTTGATACAAATCAGTTGACGCAGGTTGAGCATGAGCACTGAGCGACGTTA
TATTGTCTATCAAACGGTGATGTCTAGCATCCACTAATAAGTTATAATGCGACAAAAAAT
CTATGCCTATAATAGGCTTGCCGACGTCCGCTATAACGAAACGCCAAAAGAATGCACGTC
TAAGTCCAAAATCTAAAGAAATGTTTATCCAACCGAACGTGTTTATGGTTGAACCGTTTG
CTGCATACAGTTTATAGTCTGTTTTCACACATTGTCGATTTTGTACGCACTTATACGGAT
AAACACATAAGTCTGAACCGGTGTCAACTAAATATTGCACTTTTGTCTTACGATCGGTTA
CAAAAACACGGCCGGCTGTCACACTACCGCAGTCAGGAGTCGCCGTCTTCACTGACTGCT
TGTTTCGTTTCCCTCCCTGAAGGAACACGGCTCCCGGCACTTCGTAGATTTGTTACCAAA
ACGTCGATGGTACCAGCAGAGCCTTGTATCTACGCTGGAGCGGCTTCGGGATCGTTGACG
CCAGCGCGGGGACTGTGCTCGAGTTCTCGAGCGCGAATGGGAAATAGCCGACAGCTCATC
CATCTTCTTTGCGAGATCATCAATGCGGCGTGTCAGTTGTTCCATAGTAAACGCAGAAGA
AGAAACTTCGGTTGTGGGAACTGCCGTAGACATTGCAGCCACTTGATTCTGAGGTTGGAG
CGTAATCTCATGAATTTTATCAACAATTTGAGCGACTGAGTCTAGAGGGAGATCGACTTG
CGCTGCTATAATCGCTTGTACGTGACTAGGTAAACGACTCGTCCATAATGACCGAACGAA
CTCGTCAGGTACATCTGATCCAGCTAGATTTCGTAAGTGTCGCAGGAATTGTGACGGTTT
TCTGTCACCCAACTCTTCATGTGTAAGAAGCTGTCTCACTCGTTGTTCTTGGGACGCAGA
TAACCGCGAAATCAACTCCGTTTTTATCTTCTCGTATTTGTTTTCCGTTGGCGGATTAGT
TATAATGTCTTTAACTTCACACACGTATTTATAATCTAGATTTGCCAAGACGTGGTAAAA
TTTTGTCGCATCAACCGTGATATTTGAAAGCGCGAACTGTCCTTCCAATTGTACAAACCA
CAACGCGGGCTCATTGGGCCAAAATGGCGGGACTTTTACACCAACAGATCGGAAGAG
(3357 bp)

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