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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c25996_g1_i2
Scaffold_idBomo_Chr11
NCBI non-redundant
(nr)		pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_PRP16_isoform_X1_[Helicoverpa_armigera]
Ontology
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006369 P termination of RNA polymerase II transcription
GO:0006397 P mRNA processing
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0031124 P mRNA 3'-end processing
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:6.13 TPM:3.19
ORF EntryO_BomoMSG17958_complete:A_BomoMSG_c25996_g1_i2
Sequence
(Nucleotide)
CTGTCATTTCCATTACCTACGAAAAACGGGAAATTGTATTTTAAGTTTTAAAGTAAATTA
ACCTCATGTGAAATCAATCACAAAACACAAACATCTAAGCTAAATAATTTATAGAATCAT
TAAACAAATTGTACGATGACCGATCCCGAAGAAAATGTCCATCGTTTGGAGGGAACTTCT
GGTGACACCCCAGGTGGTTTAATCATAAGACAAAAGGATAAACCTGCAGATTTTCAATTT
GCCAAGCCTTCCTTACTGGGTCTCGATAAACTGGCTGCTGCGAAACGTAAGCAGAATCGC
CTTATATCGTTCCAAAACGAAGAAAACGAGGACGAAGGAACGAATGTGGATAATGTGGTG
AAAGAACGTAAATACAGAAAGCACAATGAAGAAACCCCCACCTATACTGGCGGTATATCA
GAGCAGGCACGGGAAAGACTCATTGAGCGGATGCAGAAAAGAGAAAAGCAAGTAAAGGAA
AAAGGTGTACACAATTCTACTCAGGAAGAAAAGAAAACACAGGCCAAAGATGATGATGAT
TATTATCGTCATTATCACAGACGCGATAGAAGGAACAATGACTACAGAAGGAATCAGGAT
AGAGATAGGAGGCGAGATAGGGATGGGGACAGTAGAGATAAGGATAGAAATAGAAGTGAC
AGAGATAGAAGAGATCGTGATAGTGAAAGGAGTAGTTCAAGAAGAAGTTATTACAATCCT
AAATTTAAAGATGAACCCAAAACCCCAAGTATTAGTGTTCTAAAGCCAACAGAAAAGACT
GCCTGGGATGATGATGATGATGACCCAAGGTCTACAGTACGCAAATCCAGCTGGGACTTT
CCAACACCTCTGCCTAGGGACTATGATCAGCGTAGCGAAAGAGGCAATAGAACAATGCGG
GATTATAAAGGCAGACCGTATGAGAACACTCCTAGGGCCACCCCGCATAAGTTTGCGAGC
TCTCGAAGATTAGTAGATGTAGATGATCCTGATTGGCAAGAAGCAGAAAAGAAATTAGAT
AGAGATTGGTACAACATGGGAGAAGGTGAAGCCGATGAATCGGATCCGTTCGGCAACACG
AGCGCGGAGTACATGGCGCGCAAGGAGGAACAAATAGAGAAACGTCGCAACAGGAAGGTG
TCCGCTCAGAGACAGCAAATAGACAAGGACAACGACCTCTGGGAACGGAACAGGATGCTG
ACGAGCGGGGTTGTCCACGCCATCAACGTCAACAACGATATGGATGAGGAGAGCGTTGAC
CGCGTCCACCTGCTGGTGCACAACATCGTGCCTCCATTCCTCGACGGAAGAATCATATTC
ACGAAGCAGCCGGAGCCCGTGATACCGGTAAAAGATCCTACGTCGGATATGGCGGTAAAC
GCACGAAAAGGCTCGGCCTTAGTGAAAGCATTCCGAGAACAAAAGGAGAGACGGAAAGCT
CAGAAGAAACATTGGAAATTAGAGGGAACCAAACTAGGCAACATCATGGGAATACAGAGG
GAAAAAGAAGAACTCGAAGATGGCCCTACAAGAGAAGCGTACAAATACGCGGAGCATTTA
GATAAAGAAGCTCAGGAACCGGAATCGAAGTCGGACTTCGTGAAGAAGATGTCCATATCG
GAACAGAGGCGCTACCTGCCCGTGTTCGCCGTCCGCGAGGAGCTGCTGCAGGTCATCCGG
GAGAACAACGTCGTCATCATAGTTGGCGAGACTGGCAGCGGCAAGACCACGCAGCTCACC
CAGTACCTGCACGAGGAGGGGTTCAGCCGGCTCGGCATGATCGGGTGCACGCAGCCGCGC
CGCGTCGCCGCCATGTCCGTCGCCAAGCGGGTCTCCGACGAGATGCACACGCGCCTCGGT
GACGAGGTCGGGTACGCCATACGGTTCGAAGACTGCACATCCCCGAGCACGGTCATCAAG
TACATGACGGACGGCATCCTGCTCCGCGAGGGGCTCCGGGAGCCGGACCTGGACAACTAC
TCCGCC
(1986 bp)

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