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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c25981_g1_i2
Scaffold_idBomo_Chr12
NCBI non-redundant
(nr)		histone_demethylase_isoform_X1_[Bombyx_mori]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0008270 F zinc ion binding
GO:0008584 P male gonad development
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0016706 F 2-oxoglutarate-dependent dioxygenase activity
GO:0019907 C cyclin-dependent protein kinase activating kinase holoenzyme complex
GO:0031490 F chromatin DNA binding
GO:0032452 F histone demethylase activity
GO:0032922 P circadian regulation of gene expression
GO:0032993 C protein-DNA complex
GO:0034720 P histone H3-K4 demethylation
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048511 P rhythmic process
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
GO:1901726 P negative regulation of histone deacetylase activity
Transcript
Level		FPKM:2.41 TPM:1.26
ORF EntryO_BomoMSG17917_3prime_partial:A_BomoMSG_c25981_g1_i2
Sequence
(Nucleotide)
TTTGACTCTCCTATTTAATTCACATTGTGTTTTAGGAGCCATTTACACATGGTGAAAAGT
CACGTACTCATTTACAACTATAAACAAAAATGATCCACGTAAGAAAGTGACAAATAAATA
AAGTCGAAACAGTGCATGCATTTTGTCCCAACAAAATGGATATCAAAAATATTCAGAAAA
ACGCCATGCAAAAAAGTGCGGAGTTCACTTTCACTCCGCCACCCGAGGCTCCAGTATTTG
AACCTACAGCTGAAGAGTTTTTGGATCCCTTGAGTTATATCGCTAAAATTCGTCCTGTGG
CTGAGAAAACAGGAATTTGCAAAATTAAGCCACCATCTCGATGGCAACCACCTTTTTCGT
TAGACGTAGACAAATTGAAATTTGTTCCTCGCATTCAAAAAGTAAATGAGCTGGAAGCTA
TTACAAGGTTAAAACTATTATTTCTTGAAAAAATCTTAAAATTTTGGGATTTACAAGGGT
CACCATTAAAGATACCTATGATTGAAAATAAAACTCTGGACCTTTATTGTTTAAAATTTT
GGGTTGATGAAGAAGGTGGTTTCGAAAATTGTAATACTCCTAAAAAATGGCGAAAGATAG
CAAATTCCATGGGTTACAGTCAAAATACCAGTACAATGAATTTTTTAAGGAGCAATTATG
AGAAAATATTACTTCCATATGAAATATTTGAGAAAAGCAAAGCTGATATTTTGAAAACAG
TTAAAAAGACTGAAACAAAAACTGAATCTAAGGTTGGAGAACCTGGAAAATTAATGTTTA
AAGAAGTATCAGTAGAATCAATTACCAAAGTCAAGGATGAGAGCGAAGTGAAAGAAGAAA
AGCTCAGCAAAAGTATAAAGAAAACAAAAACAGGTTCAGATATTACAATTGAAATAGATT
TGACCAAAAGTAATTTAGAAAATGAAGTATTAAAAAGAAACCGTGAGTTAAGAAGATTGG
CTTGCTATGGACCAGGACCTAAAATGCCAGGACTCAATGATGAAGAATTTGATATAACTA
AATCCAGAAAAAGACCGCGGTATGATTTGGATCCATTAGCAATTTATATTTGTGCAATTT
GCCAAAAGGATCACAGAGATGACCTGCTTCTCATTTGTAATGGTTGTCAAGATACTTATC
ATACATTCTGTTTAAAACCACCACTGACAGCTGTGCCAGATGGAGACTGGCGATGTCCCT
GTTGCATTGCGGCAGAGGTACATAAACCAGCAGAGGCATTTGGGTTTGCTCAAGCTGAAA
GAGAATATACGCTTCAGCAGTTTGGAGAAATGGCAGATAAATTTAAATCTGAATATTTTA
GCATGTCTGGTCATTTGGTTCCCACTAATGTTGCAGAGAAAGAATTTTGGAGAATAATTT
CATCAGTAGAGGAAGATGTTACGGTTGAATATGGAGCAGATTTACATTCAATGGACCACG
GCTCTGGATTCCCAACTAAATCATCTCTAAATCTCTATCCTGGTGATCAAGAATATGTTG
ATTCTGGTTGGAACCTCAATAACTTGCCAGTCTTAGAAGGCTCTGTATTAAGATTTATTA
ATGCAGACATATCAGGTATGACTGTCCCTTGGATGTATGTAGGGATGTGCTTTTCAGCAT
TTTGTTGGCATAATGAAGATCACTGGAGTTATTCTATAAATTATTTACATTGGGGTGAAG
CAAAAACTTGGTATGGAGTACCTGGGAGTGGAGCAGAACTTTTAGAAAATGCAATGAAAG
CAGCAGCTCCTGACCTTTTCAAAACCCAACCAGATTTACTGCATCAGTTAGTTACTATAA
TGAATCCTAACATTCTTATGGCTGCAGGGGTGCCAATTTACAGAACTGATCAGCAAGCTG
GAGAGTTTGTTATCACTTTTCCAAGAGCATATCATGCTGGATTTAATCAAGGATATAACT
TTGCTGAGGCAGTTAACTTTGCTCCTCCTGATTGGTTACCTATTGGACGAGAATGCATCA
CTCATTACAAAAAATTAAAAAGATTCTGTGTATTTTCTCATGATGAACTTATATGTAAAA
TGGCATTAGAAGGAGATAGATTAGACTTGGATACTGCATTACAAACACAAAAAGAGTTAA
TGCGCGCTACACAAGAAGAGGGATCTTTCCGTGGAAAGCTGGCAGACAAAGGTATTAAGA
ATGTTCGCAGAACTGCATTTGAGCTGCTCGGTGATGATGAACGACTTTGTGAAATCTGCA
AAACGACTTGCTTCTTATCATCTGTTTCATGTAGTGAATGCAAACATATGGCATGCTTAC
AACATGCAGAAGTTATGTGTGAATGTAAGTGGGAGAAAAAAACCTTATACTATAGGTATG
ACATGGATGAATTGCATATAATGGTACAAACAATTGACTTTAGGGTTAACAGCTTTGATA
AATGGATGACTGATGCCAAGACCCTTTTGCTCCCCACTGCCCCTGATATAGGTAGACTTC
AAAAATTGAAAAATTTGATTGATGAAGCTGATGAGTTAAAATTACCAAAATGCAAGTTAT
TTCATCAGTTAAAAGAAGAATATACAAAAACCACCGAGC
(2559 bp)

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