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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c25972_g1_i1
Scaffold_idBomo_Chr17
NCBI non-redundant
(nr)		small_subunit_processome_component_20_homolog_[Bombyx_mori]
Ontology
GO:0000447 P endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000472 P endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000480 P endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0008285 P negative regulation of cell population proliferation
GO:0030686 C 90S preribosome
GO:0030688 C preribosome, small subunit precursor
GO:0032040 C small-subunit processome
GO:0044822 F RNA binding
Transcript
Level		FPKM:4.57 TPM:2.38
ORF EntryO_BomoMSG17876_3prime_partial:A_BomoMSG_c25972_g1_i1
Sequence
(Nucleotide)
TTGATAAAGAAATGTGGAATTTATTTGAATTACGCTAATTGCACAATTTAATATAAAAAA
TGAAGAGTAAACCTGTTAAACACAAAACTACGAATACTTTTCGATTTGTGCCGTTTTCTG
AGCGAATAAATTCTATTGATATTCGACATGCTGCACTGTACCACATTGAACACGCTTACA
GCAGACAACCAGACGAGAACGAGACACATTTCAATTTGGCGATACAAAAATGGCACGTTC
TGAACCTAACAGATAATTTTAAAAGGTTTAAGAAGGAGGTCTTTGGAATTATTACTGTAC
CACAACTACTTCATAAGAAAGTCGAAATACTAGAAATTTTGGAAAAATATTTGAAACTTG
AAGATCAATTGTGTTTGCAGCCACTTCTTGAAATTCTTGTAGCTGCTGCTAAAGATCTAC
GAGATGATTTCTATCCACACTTTCCGAAATTCCTTGATGTACTTATAAAATTGCTAAATA
CAAAAAATGCAGAACAACTAGAATGGACACTTATATGTTTGGCATTTTTATTCAAAATCC
TGAAACCTTACATGAAAAAGGATATTGCTGTAATATTGAAGAGCATTGTTCCCTTGCTGA
GTGAGAATAAACCTCAGTATATTAATAATTTTGCAGCTGAGAGTTTTGCATTTGTTGCCC
GTGATATAAGGGACAAGAAGAAGTTTATAAATCTAATCTTAACTTATTTAGAAAATAATG
ATGATGTGATAATAGGTTGTGGTCATCTTTTATTTGAAATTATAAGAGGAGTCAGCGGAA
AATTTCACAGCTGCATTGAAACATTTCTACCTATACTACTACAATACTTAAAAGAAAGCA
AAGCACATCAGGATACCCTATTCAAAGTACTCACACAAACTATAGAGGATAGCTTACACA
GCATATCATATAAGGAATTTACTATATTTTGGACATGTATTCTAAAATTTATTGAAGAAA
TATTGAAAGAAGGTGATGAAGAAACTAAAGGACTAGAATACATTTTGAGGCTAGCCGGTC
AAGTAATTGAGCATCAGAATGGAAAGTTCTTAATCAACCCACCACAATTTGTTCTGTTAT
TGATAAAGGTTATATGTGAGCAGTCATCAGAAATAGTACTTGAAGTTTGTTCCCAAATTG
GGGCAATATTACTACTTTCACCGAATGTATCTTTATCACAGGAACATGCCAGCATCATTG
TTAAAGTATTATTGCCTTTGCCATTCCCAAATATCTTAACGAAATTCGTTCAAAATGTGA
TTGATTATTCTCAGTTTGATATGCACATATTGCCACCTTTTATCAAATACGTTGTCCAAT
CCGGATTTGACAATGACGCAATGTGCACTTTGAGTAAGATCTGTGTCAAAAAATCTCCTC
TATCAATGAATGGAATCATATTGTTTGAATGGGTTAAATATCCTATTGATTTCGGTCCCA
ATCTTTCAAAATTCATGGAATATTTTGAAACTGTTATGAATGGTAACACTGAACAAATGT
TGGAGAACCCATTAAAATTAGCGAATGTTTTGTTCTGTGTGCCGCATGTTAAAAACATCG
ATGTGGATTATTGTATAAAAACATTGAGTGAATTAATTTCTAAACTGTTAAAGATATTAC
TTTCTTACAATTTGGAAAGTCAACTGGACGCAAACAGATTTCACTGTGATAACACAGCAT
TATCGCGATGTGCCAGAAATATTATATTCATAGTAGCAAATTGTATAGAAAGCGCTGTTC
ACATATCCAGCTGTAAGAAAGTGGCAGAGATATGTGATATAGAAAGATTATTACCCATCA
TTCTGCCATGCGCGGCCGATCCAAACTATCTGGGTGCACTGCATTTGCTTGACTTGTATC
TAACGGCATACGAACATGAAAACGGACTAAGCTATCCATTTCTATCTTTGGTCGACTCTT
ATTTGAGAGTCAACGTGTCGTCGCCATTTCATATTGTGCGCCTTTTGACAACACACATAT
ATAAATTATTCGAAAATATAGAAGAATTGTGTAAGTCAGCAGAGATCAATGGTAACGTTG
AAAGATTTTCAGTATTCAGTATGTGTTATGCTGTGGAATCAATAACACCTTCCATACAAG
AATACAGAACTCAAATAAACATTCTACACAAAATGGCGTTTAACACGACACAGTATGCTT
TGGCGAAGGAAACAAATTTTCATCTGTTTGCCCTTGATTATATGTTAGGGGTTTTGTATA
TGAATTTTAAGTTAATATGGGAGCCAGTCGCTGAATTTGTAGCTGGCTACGGTAATGCTT
TAAGCGTTGACGAATTCTGGCCAACATTTTATAGAGCACTGCAAACTTCATTCGTCAATG
CAAAAAAGAATCTAAAACAATTTCAGTTTGATTCCGAAATCGACACCAGCTCCGTAACAC
TAAATGGATTGTATAGTGAATATAATAGCATAACTGAAAGGCCAGATCTATATAACTATA
GAAATCTGATATTAAAAGTAATGACGAACTGTATCCAAGCGTGCGAAGCAAGAAATCGTG
ATGTGGTTGTATTATTTTTAAACTTTATCGACGAAGAGTATAGAAGAGATGATAAAACAA
ATGCCTTAAAAATAGATGTTGCAAAACATGATGTTATAATGGAAGTCGACAACGGAACTG
AAGAAGAAAACGTTGAAAACATTGAAGAAATTATTGAACAAATTGACGATCAAACAGAAT
CGGTTTCAGGAAAAATAATATTCAAGACTCTTATAAATATAATGCAAGTACTAGCACAGT
TCAAGAATCCAAGGGCTTTACATAAAGAGCCAGTATTCTGGGAACTTTACATGGAGTTTT
TGAAACACAAAAATCCCGGCCTACAAAAGTTTGCTCTAGATTGTGTCCTTAATTACAAAA
ATAAAAGTATTACAGTGTACAAAAGTAATTTGTACAATTTGATCGATGAAAAGAAATTCA
AAGATGAACTAACACAATTCAAAATCACTGAAGATTCGCAATTGATACACAGTGACGATA
GAGAGCATGTGATACCAATTATACTGAGAATACTTTACGGGAAAATGACGTGTAAACTTG
CTGGTGATAAGAAAAGTGGCGGACAGGCTAGACGATCTCTAGTGATGCGATATTTGGCCG
GCTGTAGTGAAAACGAACTTAGAATGTTCATCGAAATGGCGTTTAGTTACTTCAAGAAAT
ATATGGCTATGGAGCCTAGAGAAATATTTGAAAATATTCACAATAATCTTGATTTGAAAT
CAATTACCGGCCCAGGAAAGTTGCACAGCATTTTGAATCTATTCGAAGTGGTTCGTGAAT
ATTTTGGCGGTTACATGAAAGACGAACTTTTATCGGAGC
(3339 bp)

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