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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c25809_g1_i1
Scaffold_idBomo_Chr15
NCBI non-redundant
(nr)		exosome_complex_component_RRP4_[Bombyx_mori]
Ontology
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0000467 P exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003723 F RNA binding
GO:0004532 F exoribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006364 P rRNA processing
GO:0008312 F 7S RNA binding
GO:0030307 P positive regulation of cell growth
GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0034475 P U4 snRNA 3'-end processing
GO:0043488 P regulation of mRNA stability
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0071034 P CUT catabolic process
GO:0071035 P nuclear polyadenylation-dependent rRNA catabolic process
GO:0071038 P nuclear polyadenylation-dependent tRNA catabolic process
GO:0071049 P nuclear mRNA surveillance
GO:0071051 P polyadenylation-dependent snoRNA 3'-end processing
Transcript
Level		FPKM:15.37 TPM:7.99
ORF EntryO_BomoMSG17373_complete:A_BomoMSG_c25809_g1_i1
Sequence
(Nucleotide)
GTCTAATAAAAAATCCGACTATAGGTCTATGAGTTCGTTGTACACAATTCACAATTAGCA
AAGAGGGAGCTTAAAAAAACATTAGAAATGGTCAGTCATGTATCTATAAAACTCGCATCT
GAAAGAGTAAATCATTCGGTTGCCTCAAATAATGACCCGCCGCGTTTTTACACTCCTGGC
GAAGTCATAACTGGGATACAAGATTTTATGAGAGGCCACGGAACTTACGCAGAAGATGAT
TGCCTAAAAGCATCTGTTGCTGGGGTTATGCAAAAAGTAAATAAACTTATATGCATTCGC
CCATTGAAGAGTCGTTACGTTGGAGAAATAGGCGATGTGGTAGTCGGAAGAGTATTGGAA
GTTCAACAGAAAAGATGGAAAGTTGATACCAATTCACGACTTGATTCAATACTTCAACTT
TCTTCAGTAAATCTACCTGGCGGAGAATTGAGAAGGCGTTCAGAAGAGGATGAGCAGATG
ATGAGAAAACATTTACAGGAAGGTGATTTGATAAGCGCTGAAGTACAGAATGTATTTTCT
GATGGTTCGCTCTCATTGCATACAAGAAGTTTGAAATATGGCAAGCTTTCACAGGGAACT
TTAATAAAAGTATTCCCGTCATTGATAAAGCGCAGAAAAAATCATTTTCACAACTTACCA
TGTGCAGTATCTGTCATAATAGGGAATAATGGATATATATGGATTAGTCCACACAAAAGT
GATATTCTTATGGAAGGAAATAAGGATGCAATTGAAAATTATGAAATTCAGCCTGTTGGG
AAATCAGAAAGAGAAACGATGGCGCGAGTGAAAAATTGTATTTTGGCACTTGTGGCATCT
AAGATGATGTTAGATGATACTAGCATAATGTTTGCATTCGAAGAAAGTCTCAAATACGAC
AATGTAAAGGAACTCTTGGATCCTGAAGCTATGCTTGACGTAGCATTTTTAACTCAGCAT
AGAATAAATATTATTGCAGAAGAGTGACAAAAAAAAAA
(998 bp)

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