SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c25802_g1_i1
Scaffold_idBomo_Chr21
NCBI non-redundant
(nr)		Vacuolar_protein_sorting_[Operophtera_brumata]
Ontology
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0006810 P transport
GO:0006904 P vesicle docking involved in exocytosis
GO:0007032 P endosome organization
GO:0008150 P biological_process
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0019905 F syntaxin binding
GO:0030123 C AP-3 adaptor complex
GO:0030136 C clathrin-coated vesicle
GO:0030348 F syntaxin-3 binding
GO:0030897 C HOPS complex
GO:0031091 C platelet alpha granule
GO:0031410 C cytoplasmic vesicle
GO:0031901 C early endosome membrane
GO:0031902 C late endosome membrane
GO:0032400 P melanosome localization
GO:0032418 P lysosome localization
GO:0035855 P megakaryocyte development
GO:0048471 C perinuclear region of cytoplasm
GO:0055037 C recycling endosome
GO:0061025 P membrane fusion
GO:0070889 P platelet alpha granule organization
GO:0071439 C clathrin complex
GO:0090330 P regulation of platelet aggregation
Transcript
Level		FPKM:12.96 TPM:6.74
ORF EntryO_BomoMSG17343_internal:A_BomoMSG_c25802_g1_i1
Sequence
(Nucleotide)
GTCAGAATCCATCTATAGCTGACGTAAATGGCTTCCACATCATTATAATTCCAAAAGTCT
TAAATTCATTTGATTCCATATTAGAAAGTAAAGGTTTATATGGTGTGGTTAAATTACATG
CATTCGCATGGGAATTAATGGTCCTCGATGATCAGTTATTGAGTTTAGAGTTACCATTTT
TATTTAAACAGTTATTTGTTGACCAAAATCAGTCCTTACTGTCCGGTGTAGCAATGTCTT
TATGGACATTATTTCATGTGACAGGGAGACCTAAAGTAATGTGTTCATTTGGTAAATTTT
CTGCGGGAGTACTAGACATGTTAGAAATATATAATGAAACTTATTCTAGAAACTTTGTAG
ATACAAATAATTCAAGGGATATAGGAGCGTTACTTGTTATAGATCGTACCCAGGATTATG
CGTCAAGTCTGCTAACTCCAGCTACATACAGCGGATTGCTTAAAGAAATATTCAGTATAA
ACTGTGGATTTCTGGATTTGAATGTTAAAGATACAAAAGTAATGAAAGGCAAGTTAAATT
TTGATAGTGAACAAAGCAATGAAAGTAAAAGTACAGCAATGCCTTTAGATAGTTCTATAG
ATAGTCTGTATGCTGAGATAAAACACAGACATTTCTCTGAAGTCCTCAGCGTTCTCAGTT
CTAAAGCTAAATTACTTAAAAACGAAGACATAAAAGCATTAGGTATACAAGAAATGAAGC
ACTTTGTTGCGACCAAACTCCAACAAGTGACTCTCTTCAAGCAAAATCTAGTAAACCATG
TGTTAGCTTGTGAAACGATAATATCAGAAATGAGCAACAGATTTGAGAATCTAAAATTAA
CTGAGACTGAAATGTTGAATAATAGAAACAAAAAGACCAATTATAACTTCCTTGATGAAA
ACTTCGGGACTGAAATTCACATTTATAATAGTTTGCGTCTGATGTGTTTGTTAAGCTTAA
CACAAGGTTTGTCTTATGATGAATACAATACATTAGTCAATAAATACCTCTTGGCCTTTG
GTTACAAATATTTGTATGTATTCAATAAT
(1049 bp)

- SilkBase 1999-2023 -