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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c25731_g1_i3
Scaffold_idBomo_Chr6
NCBI non-redundant
(nr)		pre-mRNA-splicing_factor_18_[Bombyx_mori]
Ontology
GO:0000350 P generation of catalytic spliceosome for second transesterification step
GO:0000386 F second spliceosomal transesterification activity
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016607 C nuclear speck
GO:0032269 P negative regulation of cellular protein metabolic process
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0071021 C U2-type post-spliceosomal complex
GO:0071048 P nuclear mRNA surveillance
Transcript
Level		FPKM:1.46 TPM:0.76
ORF EntryO_BomoMSG17154_3prime_partial:A_BomoMSG_c25731_g1_i3
Sequence
(Nucleotide)
CTCTTCCGATCTGAAGAATTGAAATTCAAGAACCAGAAGTTAACAGGGGCTTCCGGAATG
ACTTCCAAGAAGCGATGGAGAAAGTCGATGAAGCATATTTGAATGAAATATTGGCATTAG
GAACTCAGAATGAAGGTGAAAATTCGTCCAAAGAAGATGCACTTGATGATTCTATTACAT
ATGAAACCATTCAAGAAATGGCAAAAACAATGGGACAAGGCGATAGAAACCATGATATGA
ATGTAATCATGACATTATTGCAATTCTTGCTAAAGTTGTGGGGTCAGCAACTGAGTTCTG
CTGCAGCAGGACAGAAAGCAGCAATCAAGCATAAAATGACGAGAGCCACATACACCCAAA
CACAGGTTTATCTCAAGCCTCTAATGAGAAAACTAAAAAAGAAAAACTTGCCTGAAGACA
TCTGTGACAGTTTAACAGAAATAACAAAACATCTGTTAGATAGAAACTACATTATGGCCA
GTGACGCATATCTTCAAATGGCGATTGGCAATGCGCCATGGCCAATCGGTGTAACCATGG
TGGGTATTCACGCCCGTACAGGACGGGAGAAAATCTTCTCTAAGAACGTAGCACACGTTA
TGAACGACGAAACTCAAAGAAAATACATTCAAGCAGAT
(638 bp)

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