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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c25627_g1_i3
Scaffold_idBomo_Chr7
NCBI non-redundant
(nr)		general_transcription_factor_IIH_subunit_1_isoform_X1_[Bombyx_mori]
Ontology
GO:0000439 C transcription factor TFIIH core complex
GO:0000990 F obsolete transcription factor activity, core RNA polymerase binding
GO:0001111 P promoter clearance from RNA polymerase II promoter
GO:0001113 P transcription open complex formation at RNA polymerase II promoter
GO:0005634 C nucleus
GO:0005675 C transcription factor TFIIH holo complex
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0006974 P cellular response to DNA damage stimulus
GO:0009411 P response to UV
Transcript
Level		FPKM:6.38 TPM:3.32
ORF EntryO_BomoMSG16818_complete:A_BomoMSG_c25627_g1_i3
Sequence
(Nucleotide)
CTAGACATGTTAATGGTCGTAAAATTTGTATTAGAATGCTTGGTTGAATTATTTTCAATG
TTTCTTCGTCTTGATACGCACCTTAATTAAAACAATATACTACGATAGACAGTACATGCT
TTAGAGGAGAAATGTAGGAGACCTTGAATTCAACAAAACCGACAAGTGTCAAGGTAATTT
CATCCTGTTAGGACAAGTTCGGAAGTCAGGGTTTTTGAACTCTGAAAATTTGGTGGTTCA
AATATAAATTAAATTTAAATTTGTGAAGAATTAAACATGACAACATCATCCGAAGATGTT
TTGCTCAGCGTGAATTGCGTACGCTATAAGAAGGGAGACGGGACACTGTATGTAATGAAT
CAAAGATTAGCATGGATGTTGGAACACAGAGACACAGTCGCAGTATCTCATAAATATGCT
GATATCAAAACACAAAAAATTTCACCAGCTGGCAAGGCTAAAATACAGCTTCAAGTGGTT
TTACATGATGGCACATGTTCTACATTTCACTTTGTTAACCCGGGTGGCCCAGAGGCTCAG
GCCAAAGACAGAGATCAAGTGATGGTATTACTACAAAACCTTTTACCAAAGTTCAAAAGA
CAGATTGATGGTGAACTAGAAATGAAATCTAAATTGTTGTCATTGCATCCAACATTAAAA
CATTTGTACGAGGATTTAGTTATATCTAAAGTTATTAATAGTGAGGAATACTGGAATACT
CCTACTTTGAAACAGTATACAGAATCTAGTAACATTAAACAGGAAGCTGGTGTGTCAGGT
GCATTCCTTGCTGATATTCAACCACAGACAGACGGTTGCAATGGTTTGAAATACAATCTA
ACTCAAGATATCATAGATGCTATATTCAAAACATATCCAGCAGTCAGAAAGAAACATATT
GATTATGTACCCAATAAAATGACGGAAGCTGAATTCTGGACGAAATTCTTTCAATCACAT
TATTTTCACAGAGATCGAATAGCTTCGTCATCGAGCAAGGATTTATTTGGAGAATGTGCT
AAATTAGATGACCACGCTATTGCTTCAGCAATGAGACACACAACACTAGATCTTACGGTT
GATTTGAATAAGTTCATAGAGCACGTTCCACTGTTACCGACTGAAGAAGAAGCTAGCAAT
GAGAAGGATCGATCTGATAATAATTCTATACACAGAAATATGATTAAACGTTTCAACCAA
CACTCTATTATGGTGCTCAAAGCTAGTCAAAAATCAAATTCTAGTAATAATAGTAATAGC
AGTAGTAGTAAAACATCGAATAACAACAATAAAGTTATCGAAAACGGTGTCAAAGATACA
AATGGTGTCTCAAAGAGACCGGCCGAACACAGTACAGAACCGATAGAAAAGAAAAAACGA
ATATTAGAGCAGATACACTACGAGGATCTAGTTGCAGACCAGGGAAATGATGATGTACAG
GAATTAAAATTGTCTAAGGTAGAAAGATATTTATTAGGACCGTCGTATCAGATAAGTCAG
ACGAGTGTTCAGACGAGCCACCCGCCGCCGCTGTCGGCCTTGGCGTCCGTATGTCAGGCG
TGGTCGAGCGGCCAACAGTGCCAGCGGCCGGCGCGGGTGAGCGCGGGCGCGGCTGTGGGC
GCGCTGGGGGAGCTCAGTCCGGGCGGCGCGCTCATGCGGCACCACCACGCCGCCTCTATG
GCACAACTAATACCGGCGGACGTGAAGGCGGAGCTTCAGAGGCTGTACGCGTCGTGCGGC
GAGCTGGCGAGGGAGCTTTGGCGCAGCTTCCCGCAGCCGGGCGCGCCGCCAGCCAACGAG
CAGGACGCGGCGCCGCGGGCGACCATGTTCTACGACGCGCTGTTGCGGTTTAGGAATTTG
AAACTGAGGCCCTTCGAGGAGAAGATGCTCCGTGACCTGACGCCCCTGGCGACGACTCTA
ACGAAACATTTGAACCAAATAATAGACACGGCCTGCGCTAAGTACGTGCTCTGGCAACAG
AGGCAAGCGAAGATACGGTAGTACTAGCTGTAACGTTTCGGTACAGTCGGGAAGTAAATT
GATAAATTTCGTTACGGGTCTGCCGCCTCTCTGAGACTCTGTAGTGGCTCGCAGCGCAGT
TCGGCTTGATGACGGAACTTATTGGTAATAGATTGGTAGGGACGTTTTATCCGGTAAAGA
GCCAAGAAAAAA
(2172 bp)

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