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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c25572_g1_i2
Scaffold_idBomo_Chr12
NCBI non-redundant
(nr)		pre-mRNA-splicing_factor_SPF27_[Bombyx_mori]
Ontology
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005662 C DNA replication factor A complex
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030054 C cell junction
GO:0071011 C precatalytic spliceosome
GO:0071012 C catalytic step 1 spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:14.99 TPM:7.80
ORF EntryO_BomoMSG16640_complete:A_BomoMSG_c25572_g1_i2
Sequence
(Nucleotide)
GAATATTTTCAAAATAAGTTCGTTGATCTCTCAGCTTAAAACTAGCTCAAACGAAGAATG
TCACACAAGTGACACAACTAAAATCAAATAAACAAAGAACAGCGTTAAAACTTTAATATA
AAGTGATAAATCACAGTACCCATTCGTAGTAAAGGGAGTTATAAATTTTGTAGAAAATGG
CAGGAGAAGTTGTCGTAGATGCATTACCATATATAGACCAAGGATATGACGATCCTGGAG
TAAGAGAAGCTGCATTGGCCATGGTGGAAGAAGAGTGCAGACGCTATAGACCCACAAAGA
ACTATCTTGAAAATGCAGGACCAGAACCAAGTTCTGCATTTGAAACTCCTGCTTTACAAC
GAGAGATGGAAAGAGTGCAACAGAGATTGCCGATGGAACCATTGTCTATGAAGAGGTATG
AACTTCCACCCCCTCCAGTCGGAAGAATGAGTGAACCAAGTGCCTGGGCCGAGTCAGTTG
ACAACTCTCATGCACAGCTGTCACACCAAGCTATCAGAGTTCTCAATTTAGAGTTGCAGT
TAGAGTACGGTTCAGAAGCATGGAGATCATACCTCAATACACTTCAAGCATTAGTCACAA
GAGCTCAAAACGAACACAACCAGTTACGTAAACAAATAGGCTCTGTGAACTGGGAACGTA
AACGCGTACAAACAGCAAGCGGTGCGAGGTTGCGGGCATTGAGGCGACGGTGGGCGCAAC
TTGTCTCGGACAATTATAGACTTGAAAGAGCCCTACTTCACTTACAACAGGCAAAGGGAG
AAGTACCAGTAGAAGAAGGAGAAGAAGCCGATTTGGACATTGTAAAGTTACCTGAAAAAC
TCAATTCGGAAACAGAGAAGGAAGTGCAAAAGAAAATTGAAGATATGTTTGCGGATTAAA
AGGAATTTTAGAACTTTGGAGTAGTGTTTTGGCCATTGATAGGTACAACAAGTGGAGCCG
CCCTTATGGC
(970 bp)

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