SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c25572_g1_i1
Scaffold_idBomo_Chr12
NCBI non-redundant
(nr)		pre-mRNA-splicing_factor_SPF27_[Bombyx_mori]
Ontology
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005662 C DNA replication factor A complex
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030054 C cell junction
GO:0071011 C precatalytic spliceosome
GO:0071012 C catalytic step 1 spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:3.02 TPM:1.57
ORF EntryO_BomoMSG16637_complete:A_BomoMSG_c25572_g1_i1
Sequence
(Nucleotide)
GAATATTTTCAAAATAAGTTCGTTGATCTCTCAGCTTAAAACTAGCTCAAACGAAGAATG
TCACACAAGTGACACAACTAAAATCAAATAAACAAAGAACAGCGTTAAAACTTTAATATA
AAGTGATAAATCACAGTACCCATTCGTAGTAAAGGGAGTTATAAATTTTGTAGAAAATGG
CAGGAGAAGTTGTCGTAGATGCATTACCATATATAGACCAAGGATATGACGATCCTGGAG
TAAGAGAAGCTGCATTGGCCATGGTGGAAGAAGAGTGCAGACGCTATAGACCCACAAAGA
ACTATCTTGAAAATGCAGGACCAGAACCAAGTTCTGCATTTGAAACTCCTGCTTTACAAC
GAGAGATGGAAAGAGTGCAACAGAGATTGCCGATGGAACCATTGTCTATGAAGAGGTATG
AACTTCCACCCCCTCCAGTCGGAAGAATGAGTGAACCAAGTGCCTGGGCCGAGTCAGTTG
ACAACTCTCATGCACAGCTGTCACACCAAGCTATCAGAGTTCTCAATTTAGAGTTGCAGT
TAGAGTACGGTTCAGAAGCATGGAGATCATACCTCAATACACTTCAAGCATTAGTCACAA
GAGCTCAAAACGAACACAACCAGTTACGTAAACAAATAGGCTCTGTGAACTGGGAACGTA
AACGCGTACAAACAGCAAGCGGTGCGAGGTTGCGGGCATTGAGGCGACGGTGGGCGCAAC
TTGTCTCGGACAATTATAGACTTGAAAGAGCCCTACTTCACTTACAACAGGCAAAGGGAG
AAGTACCAGTAGAAGAAGGAGAAGAAGCCGATTTGGACATTGTAAAGTTACCTGAAAAAC
TCAATTCGGAAACAGAGAAGGAAGTGCAAAAGAAAATTGAAGATATGTTTGCGGATTAAA
AGGAATTTTAGAACTTTGGAGTAGTGTTTTGGCCATTGATAGGTATGAAATGTAAATTAA
ATGTTCAATTTAAAGTTGTGGCTATAGAATCCTACTTATTGTTTCTAAATATGTATGTGT
TATTATAAATTTAATAAACATTCTACTTTTTTAAATATGGCAATTGGCTTCTTGTGATTC
GATTTTTATTAGTGCCGAGATTAAAACATTCAGTATGGAAGGAGAAAACATGTTG
(1135 bp)

- SilkBase 1999-2023 -