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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c25547_g1_i2
Scaffold_idBomo_Chr3
NCBI non-redundant
(nr)		probable_ATP-dependent_RNA_helicase_DDX46_isoform_X1_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0010501 P RNA secondary structure unwinding
GO:0015030 C Cajal body
GO:0016020 C membrane
GO:0016607 C nuclear speck
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
Transcript
Level		FPKM:19.39 TPM:10.09
ORF EntryO_BomoMSG16576_complete:A_BomoMSG_c25547_g1_i2
Sequence
(Nucleotide)
TGTCAAATGTAGAATCCGTGGATGCAAGCGAGCGCTTTGTGATTTTGTTATGCGTACTTT
TATCTCATAGCAATCGAACCAAATTTCACAGCTCATTTTGTTTCAAGAATCTTTTATTAG
TATTAAGTAAGGCACCGTTGATTTAGGCATGAGAAAAATAAAACGTGTAAAAATCTCTTT
ATATTTGCTTTAAAAAATGGTTAGGAGTGGGAGAGACCGTGATAGGGAAAGGGATCGACG
TAGATCTCGAAGTCGTTCTGACACACCGGATCGTAAACGAAGGAGGTCAAGATCAAGAAG
TCGTGATCGGGGCTCGAAATCTTCAAAGAGGAAGCGCAGTCGTAGCAGAGATCGTGACTC
TAAACGAGACCGAAGCCGAGAACGGGATCGCAGTAGGGAAAGAGATCGTAGTCGTGAGCG
AGATCGGGACAGAAAAAGTGATAAAAGAGATGATAAAAGAAATGGATCTAGTAAATCATC
GAGAAAGAAGTCACCGGAGAAGGAAAGGGAGAGATCAAAATCAAAGGAAAAGAGTAGCAA
AGCTGATTCTTCTGAATATAACCCGGGCTCTGTTGACAAGGAAGAAGAGCAAAACCGCTT
GGAAGCTGAAATGCAAAAACGTCGTGAACGCATAGAGAGATGGAGGGCTGAACGTAAACG
TAAAGAAATCGAATCCGCTAAAAAAGAAGTTCAAAAAGGAAGCATTGTTACTAATATACA
AATACCGACATCAAAGAAATGGTCACTTGAAGATGACTCTGGTGATGAAGCTTTGCCAGG
TGAAGATGCGGAAGGAAAAGAAAAAAACAATATAGGAGAAAAGAAAGAAGAAGAAGATGA
AATTGATCCTTTGGATGCGTACATGCAAGAAGTGCAACAAGAAGTGCGTAAAGTCAATCA
AATGGACCAAGCCAAAGGAATTATTAGTGTTCCAACAACAGGTGGCACTGGCATTGTAAT
TCTTACTGGCACTGCCAAAAAAAAGGTCACTGAGCAGAAAAATAAGGGTGAACTGATAGA
ACAAAATCAAGATGGCTTGGAGTATTCGTCTGAAGAAGAAACGGAAGACATAAAAGATGC
CGCTGCAAATCTTGCTTCCAAACAGAGGAAAGACTTGATCAAAGTAGACCATGCTAGTTT
AGACTACATGCAATTTAGGAAGTCATTTTACACAGAAGTGAATGAACTAGCAAGAATGAC
ACCAGAGGAAGTAGAAACGTACAGGACTGAGTTGGAAGGTATTCGTGTCAAGGGAAAAGG
CTGTCCGAAACCGATCAGGACATGGGCGCATTGCGGTATCAGTAAAAAAGAACTTGACAT
TCTAAAGAAGTTGAATTTTGAAAAGCCCACCCCGATACAAGCACAAGCGATTCCTGCTAT
TATGTCTGGAAGAGATCTAATAGGAATTGCGAAGACTGGTTCAGGCAAAACATTAGCGTT
CATCCTGCCAATGTTCCGGCACGTGTTGGACCAACCGGCGTTAGAAGATACAGACGGACC
AATAGCCCTCATAATGACTCCTACAAGGGAACTCTGCATGCAGATCGGCAAAGATATAAA
GAAGTTTGCAAAGTCACTCGGATTACGTGTGGTTTGCGTTTATGGGGGCACCGGGATATC
GGAACAGATAGCTGAACTGAAGCGTGGTGCCGAAATGATAGTGTGCACCCCGGGACGCAT
GATCGACATGTTGGCCGCCAACTCTGGGCGCGTCACCAACCTGCGCCGCGTCACGTACGT
CGTGCTCGACGAGGCCGACAGAATGTTTGACATGGGATTCGAACCACAGGTAATGAAAAT
CATAGACAACATAAGACCCGACAGGCAGACCGTGATGTTCAGCGCAACTTTCCCGAGACA
GATGGAGGCTCTCGCTCGTCGGATATTACAGAAGCCAATCGAAATACAGGTTGGTGGAAG
AAGTGTGGTCTGCAAGGATGTGGAACAGCACGTCGCTATACTAGAGGAAGAAGCTAAATT
CTTCAAACTGCTGGAACTCCTCGGACTCTACAGTCAAATGGGAAGCATCATTGTCTTTGT
GGACAAACAGGAGAACGCCGACAGTCTGTTAAAAGACCTCATGAAGGCCTCGTATTCTTG
CATGAGCTTACACGGAGGGATTGATCAATTCGACAGGGACTCGACGATAGTCGACTTCAA
GAACGGCAAGGTCAAGTTGCTGGTAGCGACCAGCGTTGCTGCCCGAGGGCTGGACGTCAA
GCAACTAGTTCTGGTGGTCAACTACGACTGCCCGAATCACTATGAAGATTATGTGCATAG
ATGTGGACGCACCGGGCGCGCCGGCAACAAAGGGTTTGCCTGGACCTTCCTCACTCCGGA
GCAGGGTCGGTACGCGGGCGACGTGCTCAGGGCCTTCGAGCTGGCCGGAGTCAGTCCTCC
CGCCGAACTAAAGAACCTGTGGGAGAAGTACAAGGAGGCGCAGGAGAAGGACGGGAAGAA
GGTGCACACGGGAGGCGGATTTAGTGGGAAAGGTTTCAAGTTTGACGAATCTGAAGCCCA
GGCTGCTTCGGAAAAGAAAAAGTACCAGAAGGCGGCTCTCGGCCTCCAGGACTCCGACGA
CGAGGACGTGGAGGGAGATCTCGATCAACAAATCGAGACGATGCTCGCTGCCAAGAAGAT
TGTCAAGGAAATTAAACCGGGCGTGGCCGTGTCCGGTCCCGCCGCGGCTGCTGCTAGCGC
GACGGACGGAAAGCTGGAGTTAGCGCGGCGGCTCGCGTCCCGCATCAACCTCGCCAAGGG
ACTCGGCGCAGACCAGAAGGGCGCCACGCAACAAGCCGCCGAGGCGATCCTCAAGGGCGC
GCCTTCGCAGACACTCATCACGGCTAAAACAGTGGCGGAACAGCTGGCCGCGAAGTTGAA
CACGCGACTCAACTACCAGCCGCGAGACGACAACACAAACGAACCGACCGAGGAGGTGTT
CCGCAAGTACGAGACCGAGCTGGAGATCAATGACTTCCCGCAGCAGGCCAGGTGGAGGGT
CACTAGCAAGGAGGCGCTAGCTCTAATCAGCGAGTACTCAGAGGCCGGTATAACGGTCCG
CGGCACGTACGTCCAGCCGGGCAAGGCGCCGCCCGAGGGCGAACGCAAGCTGTACCTCGC
CATAGAGAGCTCGCAGGAGCTGGCCGTTGCCAAAGCCAAATCCGAGATAACGCGGCTCAT
CAAGGAAGAGCTCCTCAAACTCCAGACCTCGGCCCATCACATGGTCAACAAAGCTAGATA
TAAAGTTT
(3248 bp)

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