SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c25493_g2_i1
Scaffold_idBomo_Chr21
NCBI non-redundant
(nr)		protein_SMG5_[Bombyx_mori]
Ontology
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0031625 F ubiquitin protein ligase binding
GO:0032204 P regulation of telomere maintenance
GO:0035303 P regulation of dephosphorylation
GO:0042162 F telomeric DNA binding
GO:0042826 F histone deacetylase binding
GO:0051721 F protein phosphatase 2A binding
GO:0070182 F DNA polymerase binding
Transcript
Level		FPKM:12.48 TPM:6.49
ORF EntryO_BomoMSG16433_internal:A_BomoMSG_c25493_g2_i1
Sequence
(Nucleotide)
GGTAATTTTCACCATTTCTTAGATAGAATTCATTATGAAATGAAAGTAGATTTCAAGGAG
TTAGATTATATGCCCAATACTGAAGAAGATGAGTTGCAACTATCTTCTGGTAATGTTGAA
CTATCAAATTTTGGAAAATCTGCTTTGCACTCATGTTTGATATATTTAGGGGATTTAAGT
CGTTATGCAGTGGAAATATCAAATCACTTTGAACCAACAATTGCTGCTCGATACTACTTA
CAAGCTGCTCATACTGACTTTACATTGGGAATGCCTTATAATCAATTAGGAAACCTTTAT
CTTGAAAAAAATTACAACTTGGATTCTGTATGTTTTTATATTCACTGTCTTAATTCTAAA
AATCCATTTGAAGGGGCCATGGGTAATCTTACAAAAATATTTGAGAAAAATGATCAGTTT
TACCATACAATAAATGAATCAGATACTTTAACTCAGGTTGAACATATACAAAATACAATT
GTGAATTTTCTTTCATTAATTGAGATATGGTACTTGAACAAATCTGATTCTGATATTCCT
CAGCGCTGCAGCAAAATCGCACAGCAGCTAAAGATTTGTATGGAGTTTAATGAAGCCACA
AGATCG
(606 bp)

- SilkBase 1999-2023 -