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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c25412_g1_i2
Scaffold_idBomo_Chr3
NCBI non-redundant
(nr)		5-methylcytosine_rRNA_methyltransferase_NSUN4_[Bombyx_mori]
Ontology
GO:0000049 F tRNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005762 C mitochondrial large ribosomal subunit
GO:0006364 P rRNA processing
GO:0008168 F methyltransferase activity
GO:0016428 F tRNA (cytosine-5-)-methyltransferase activity
GO:0016740 F transferase activity
GO:0019843 F rRNA binding
GO:0030488 P tRNA methylation
GO:0031167 P rRNA methylation
GO:0032259 P methylation
GO:0042254 P ribosome biogenesis
GO:0042256 P mature ribosome assembly
GO:0070131 P positive regulation of mitochondrial translation
GO:0070181 F small ribosomal subunit rRNA binding
Transcript
Level		FPKM:5.99 TPM:3.11
ORF EntryO_BomoMSG16168_5prime_partial:A_BomoMSG_c25412_g1_i2
Sequence
(Nucleotide)
AACAAAACAAGACGGCTGGTCAAAGAAGAAAATATCAAGAAAAGTTGTAAATATTAGGTT
TCCCTAACCTAAAAATCATTCAGTCACGAAAGGAATAACTAAGTATTAAAAATGCTTCAA
ATAACAAATTTGATCAAGAAAGGGCCTACAACTTGTGCTCACTTATTAAGACAATCTCGA
CATAAATCTAAAACTCATTGGGCAAAGTTAAGAAAAAAGACCGGCCCTAAATACAAGGCA
ATGAATCATTTTGATGAATTTTACGGGTCCGTTTTCGGTAAGAAATGGGATCCCATGAAA
CGAGCATTATTACAAGGCCCGAAGTATGTAGCCGTGATCAACAATTACGGAGACGCCGAA
GAGACTATGGAGTATCTTACGAATAGAGGTGCACATTGCCTAAAGAAACTAATAACAGTC
CAGGAAGATTTTCATAAACAATATTCTGTGAACACAACAACCTCTGATCAAGAAGCACCA
GTATACATAAATAAATTACAGCAATTAGCAGAGAAGGCACATTCTGATGAAATATCCAGT
ATTTATCCGAATACTGATAATAAGCCTGAAAGACTCGACTTCAAAGACGATGATCAAATT
TCTGAAAGAAAGGAAATTACGGAGCAGAAGGAACCAATAAACAAATCATTAGATCAGGCG
ATAGCAGATGCTGTCATAGATGAGTCTCGAATGATTGACCCATCTATAGGCTTGACCTCA
GAAGCGTTGTATCAGTATTTACCAGCAACTAAACTTAAAGGCATGAATGACTGGGTACCA
GAGTCTACACACTATTCTTATTATTCAAAAATAGTTGATTTCCCCTTAACTATCGAGCCC
GAGACTGAATTGCAGTACCCGGAACACCTGAAAGTGTTCACTTATGAAATGGACAGTGAA
CTTAAAATGTTCCCCGAACCGAAGAGATCACAAACAGGCGTGTTTAACTACTACCCCATG
GATTGTGGCAGCGTGTTAGCCGTGCTAGCCCTGGGGTTGAGAGCCGGCGACAGGGTCCTG
GACTTGTGCTCTGCTCCCGGGGGCAAGGCGCTGGTCGCGCTGCAGACCTTGTTACCGGAC
GTGGTCATATGTAACGACGTGTCTATATCTAGATCGAACAGAACACAAAGGGTGTTCAGC
GACTATCTGTTCGATTTCGAGACGGGCAACAAGTGGCGGGAACGCGTCATCTTCAAAAGG
GTCGACGGCAGAATGTTCACAGACGACCACGGCTTCGATAAGGTTCTAGTGGACGTGCCG
TGCACTACGGACCGACACTCTGTGACCGAGGATGACAACAACATCTTCAGGCCGGACCGG
GTGAAGGAGAGGCTCAAGATACCGGAGCTCCAGTCGCACTTGTTGGCAAACGCGCTTCGT
TTAACGAAGGTCGGGGGGACGGTCGTGTACTCCACGTGCTCGCTCAGCCCCATACAGAAC
GACGGGGTGGTGCACATGGCCCTCAAGCAAGTCTTCGAGAGCAACGACATCATCGCCACC
GTCGTAGATTTAACTCCAGCGGTC
(1524 bp)

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