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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c25336_g1_i1
Scaffold_idBomo_Chr5
NCBI non-redundant
(nr)		histone_deacetylase_6_isoform_X1_[Bombyx_mori]
Ontology
GO:0000118 C histone deacetylase complex
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0004407 F histone deacetylase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006476 P protein deacetylation
GO:0014003 P oligodendrocyte development
GO:0016568 P chromatin organization
GO:0016575 P histone deacetylation
GO:0016787 F hydrolase activity
GO:0019899 F enzyme binding
GO:0032041 F NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0033558 F protein deacetylase activity
GO:0042826 F histone deacetylase binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0070932 P histone H3 deacetylation
Transcript
Level		FPKM:2.42 TPM:1.26
ORF EntryO_BomoMSG15927_3prime_partial:A_BomoMSG_c25336_g1_i1
Sequence
(Nucleotide)
CCTCCAACCGCACTTGACATATATTCCACAAAAACAAACAAATCACTAAAGTTCAATAAA
ATATTTTGGCTAAAAAATTCAGTTGATAACAATGTATCTTCAGTAAATAAAATAAATGGT
TTTAGCAAAACAAAAACGTTAACATAATGGCTACACCTCCGCCGACGCAGTCTCGTAGAT
CGGGCGGTGACAGTAAGAAAGTAACGCCGCCAACGTCCAATATAGTGACCAGGAATGGAG
CTCGCAAGGCCAAGATTCAAACTCGAGCAATGTCCGCCGCAGCTAAGCCTTCAGCATCCT
TAATAGCAGCTAAAAAGAAGGCTCAACAGAAAAAGAAGCAAAATCATTTCGTATGGAGAT
CAGGGATCATTTTCAGATTGCGATGGAATCGAAGACATTAGTGAAGGGTCCAACCGGATT
TGTCACCGAGCCTCGCATGGGAGAACACAGGTGCTTGTGGGACGAAAATTACCCAGAATG
TCCGGAAAGGCTCATTAGTGTCATCAAGAGGTGTCAGGAACTGAACCTGGTCCAGCGCTG
CAAGCACTTGGAGCCCCGCGCGGCCACCAAGGAGGAGCTCTGCGTGCTACACGCGCCCTC
CGTGTACGAAATGTTAGAGACGACACACGGAAACGACGACGCCGCGTATTTGGAAGAGCT
CTCATCGAAATTCGACGCTATTTATATTCATCCAAGCACGCACGAGTTGGCGCTGATATC
GGCCGGCTCGACCATCGACATGGTGGACAGCATCGTGTCGGGTGAAGTCCAGAACGGCGC
GGCCTTCGTGCGGCCGCCGGGACACCACGCCATGCACTCGGAGCCCTGCGGCTACTGCTT
CTACAACAACGTCGCTTTGGCCGCCAAGCACGCCTTGGACAAAAGGGGTCTGCAAAGGAT
ACTGATCGTGGACTGGGACGTTCACCACGGACAAGCCACACAGCAGATGTTCTACGACGA
TCCCAGAGTGGTATACTTCTCGATACACCGCTACGAGCACGGCTCGTTCTGGCCCCAGCT
GCGACAGTCCGACTTCCACTACGTCGGCAGCGGCGCCGGTAAAGGATACAATTTCAATGT
GCCCCTCAACAAAACCGGGATGAAAGACGGAGACTATTTGGCCATCTGGCACCAGCTGCT
TCTGCCCATGGCCTACGAGTACCAGCCGGAGTTGATCATAGTATCTGCAGGATACGACGC
GGCCATCGGATGTCCCGAGGGAGAGATGGAGGTGAGTCCGGCGTGCTACGCGGTCCTGCT
GCACGCGCTGCAGTCGGTGACGTCGCGCGTGTGCGTGGTGCTGGAGGGCGGCTACTGCCT
GACGTCGCTGGCCGAGGGGGCCGCCCTCACGCTGCGGACGCTGCTGGGCGACGCGCCCCC
CAAACTGGAGCCCCCCACGCCCCCCTGCGACTCAATCCGCGACACGATACTGGACTGCAT
ATACGCGCACAGACAGTACTGGAGCTGCTACAGCTACCAGCCCGCGCGGGGGGACCGCCA
CGAGGTGCTCGTGCGGTGGCGGGGCGACGAGACGCGCCCGTCGCGCTTCGCCACCCGGG
(1559 bp)

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