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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c25274_g1_i3
Scaffold_idBomo_Chr8
NCBI non-redundant
(nr)		PAB-dependent_poly(A)-specific_ribonuclease_subunit_PAN2_isoform_X2_[Bombyx_mori]
Ontology
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000932 C P-body
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0016787 F hydrolase activity
GO:0031251 C PAN complex
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
Transcript
Level		FPKM:4.72 TPM:2.46
ORF EntryO_BomoMSG15801_5prime_partial:A_BomoMSG_c25274_g1_i3
Sequence
(Nucleotide)
GTGGCATTGCGGGATATGCGTGCTCCTACAAAAGCTGAGCATACATTCAGAGCACACACG
GCTTGTCTATCTGATCTGGATATGCAAGGAGATCTGTTGCTCACATGTGGATTTACTCAG
GCCGTTGGAGGGGTAGTCGCAGAACCCTACATAGTGGTCTGGGACGTCCGATGTCTACGC
GGCAGTAACCCTGGACAAGGAGGTTGGACCATTCATACCACATCACCGCCACTGCTACTT
CACTTCCTGCCGGCGTTCTCTGGTAGGGCAGTAGCTGCTTCGGGCGACGGACACGTCAGT
TTGTTACACGTGAACGCACCTGAAGAAAGGCAGTCAATTTTTAAGGTAGAGACGCACAGT
TCACAGTGCAATGTGATGGACGTTGCGTCGACGAGTCAAGCCCTCGCTTTCGGCGACCAA
TCAGGACATTTAAATCTTTTCTCACCGACGCAGAATCACGAACCTGTATACAATAATTTT
TCAAGGTCAACAGAGTTCGCGGATCCAGTGGAAGGTCTACCTTACGTTCGGTTCAGCGAC
ACCAGGTTCCAGTACTCGTCGGTGCCACTACCTCAGTTGGCGAGCGGCGGGAAATGGTTC
AATGAATTGCCACCGGAATTCTTTAGGAAAGTGTATAGAAAACCAAAGCCAGTCGATCCT
GAAGTTTTGAAATCGATGAAAATGCAAGGTCCAATAGGATACGCGCCTAATCCGAAAACT
TTTAAAAGGAATCAGATGCCGTACCTTGAAGAATCGTTAGAAGAAATGAGTATATCAAAA
ATAAATGGAAATAAAGTAATAATGCAGCCGATACCGAAACATTATCAGAAGCTCGACATA
CGATATAATAAGCACGGTCCGAATGAAGAATTAGAGAGTTTCAATAAAACAGGTCAGCCC
GGACTGGAAGCGACATTACCGAATTCATACTGCAATGCCATGTTACAGGTTTTGTACTAC
ACGCCGCCGGTCAAAGCCACGTTGCTAGCGCACACGTGCGCCAAAGAGTTCTGTTTGAGC
TGCGAATTAGGTTTTCTATTTCGCATGCTGGACACGTCTGGCGGCACCCCTTGTCAGGCC
ACAAACTTCCTACGCGCGTTTCGTACGGTCCCCGAAGCGGCTGCCCTAGGACTGATACTG
CCGGATCGAGCGCCCGACATAAGAGTCGATTTGGTAGCCTTAATACAGAGCTGGAACCGC
TTCATCCTGCACCAGATTCATTACGAGATCCTCGAGACCCGTAAGAAGGAGAAGGAGTTA
GCGCTGATAGCGAACAGTCCGCCCAAAGCACCACGCGCGTCCAACCCGAAGGAACGTCAC
TCGCTAATGAACGGACAGTACTCCGAGGAGTGTCAGTATACCGAACTGGAGTTCTTGGGA
CCCACCGAATTTGATTGTCAAGAGGATGGCGAACTCTGGCCGGGCAGGGATGAAGGCGTC
GACGGCGTGGGGCCGTTGCAAAACCACGAAAGTCACGAGCTGAACAACCGACAGGCGCAC
CGGGAGGAGACCGAGATCTCGCAGCTGTTCGCCATCGGTCGGCATCAGCTCAACCGCTGC
TTGAAGTGCAACAAGGAGGAGGGCAGGGAGTCGGTGGTGCTGGCGTGCGCCCTGCAGTAC
CCGCCGACGGGCGCGGGCGGCGCCGGGGAGGCGAGGGGCGGATTCGTCGAACTCGTGCGC
GCGTCGCTGGCGGCGCGGCGGAGCACGCCGGCGTGGTGCGACCACTGCTCGCGGTTCACA
CCGACCACGCAGCGAGGGCGACTGCTGCGACTACCTCCTATATTGGCGATTAATTGTGGA
GGAGTTACGGTCAGAGAGAAAGCGTATTGGGCTAAAGGAGTACAAAAGGAAATGTCCGAT
TCGAAAAGAGGGGGCAGCGGGAAACCGTGTCGCTACGGCTTACATTGCGCACGACCGGGT
TGTCATTTCAAACATCCCGATCGGCCGAATACATCACAAAGTTCTTCCAAGGGCTCGAGC
CAGGAGTCGCACTGCATGCTGCCGCTTCAGCTGCTCATCCGGCTTCAGTCAGACGGTGAC
GTCATCATCAACGACAAGATCGAAACTAATTCAGCGGAGAGTTCGCCGATCAACCGACCG
GACACGAGCAGGCACAATAAGAAGTACGTGACCACGCACCTCGAGGAGGAGTACTCGCTC
TCGGCCGCCGTCGTCTGCGTCGAGGACAACCCTAAGAACTTGGTCGCCTACATACACACG
GTCCGGGACGGCGAAACTCAATGGTTCATGTACAACGATCTATGTATCGTTCCGGTGAGT
ACGGACGAGGTGATACATTTCGGCGTGTGGTGGAAAACGCCTTGCGTGCTATTCTACACG
GCGACCGGCGGCGGACAGTGCAACGGTGACGTCAGCTCATAGCCGACGCTCTTGTATGGG
CCATACACTACGCGTACCGCAGGCCCATACAGCATGGAACAAACTTACTATTGTGTACGT
CCGCCAACGCAGTACGACTACGTTTGAAATTTCCTCATAGATGTAAGTTTAGTGAATATT
AAGGTGATTACGCGAACAAACGCTTGTTTGCAGTACGTGTGATGGTCGAGTCTGAAATGA
ATTGGATAATGAAGTCTTATCAACGGGTCGTTCGTGTTGCGCGAAATTAAGTCTTATCGC
ACTTACGTAAGATTGAAATTGTGTTTCCGAGACAGCGATTAATTAGGTCTTGCCAGGGAT
TATTCATTTACCAACTACATACTTTTAGGGAATTTCGAAACTAATCGAACGAACATTGCG
CTAATGCACAGATCTCACTTTTATTTTTGTATAATAATTAGTACATGCTCTATGTGACTT
TAAAAAAAAACATAAGTTAATAATTTTTTTTGTCGGTCCAATGAAATAATAATACAGTCA
ACATTGTTAACGCGCGATTTTTACTGTACAGTAATTTGGAGATTTTAAATCATTAATAAT
ACGTTTCGATTTGTCATAAATAGAGAGATCGGAGGAGC
(2978 bp)

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