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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c25220_g1_i1
Scaffold_idBomo_Chr5
NCBI non-redundant
(nr)		exosc7_protein_[Bombyx_mori]
Ontology
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0000467 P exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003723 F RNA binding
GO:0004532 F exoribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006364 P rRNA processing
GO:0006401 P RNA catabolic process
GO:0017091 F mRNA 3'-UTR AU-rich region binding
GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0034473 P U1 snRNA 3'-end processing
GO:0034475 P U4 snRNA 3'-end processing
GO:0034476 P U5 snRNA 3'-end processing
GO:0043488 P regulation of mRNA stability
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0071028 P nuclear mRNA surveillance
GO:0071035 P nuclear polyadenylation-dependent rRNA catabolic process
GO:0071038 P nuclear polyadenylation-dependent tRNA catabolic process
GO:0071042 P nuclear polyadenylation-dependent mRNA catabolic process
Transcript
Level		FPKM:17.17 TPM:8.93
ORF EntryO_BomoMSG15666_3prime_partial:A_BomoMSG_c25220_g1_i1
Sequence
(Nucleotide)
GTCAACTGGTGCGGGTAGCGGAGTAGCGGGTAACTTAGGCGAATTTTTAGTGAACATAAA
TGATAAAACTTTCGTTACTTTCGTAAATAAACAGAAACAATAAACATGGCAGGACTGTTA
TTAAGTTCTACAGAAAAAGTTTTTATTGTTCACGGTGTACAAGAGGACTTTCGTTCCGAT
GGCCGATCAAACATTGACTATAGGCCCATGGAACTAGAAACAGATGTAGTGAGCCACGCA
AGTGGCTCAGCGCGGCTTCGTCTAGCAAACACAGACATTTTAGTTGGCATTAAAACAGAA
ATAGATACACCAAAGCCAGACAAACCAGATATGGGAAAAATTGAGTTTTTTGTTGATTGC
TCAGCAAATGCCACACCGGAATTCGAAGGGCGTGGTGGAGAAAATTTAGCTAGCAGCATT
TCAAACACAATGCAAAGAGCATATCACTCATCACAAGCCTTTGATTTGAAGCAACTATGC
ATTGTAGAAGGCAAACAGTGCTGGAAACTTTATGTTGATATATTGATCTTGGAATGTGGG
GGTAATTTGTTTGATGCAGTTTCATTAGCAACCAAAGCAGCTCTGTTTAACACAAGGATA
CCATTAGTAAAAGCCTTGTTGATGGATGGAGGAAATGTTGATTTACAACTCTCAGATGAT
CCTTATGATTTCAAATTTCTAGATGTTGGTTCTGCACCTTTGTTGGTAACGCTATGTAAA
ATAGGAGAAAAATGCGTGGTAGATCCCTCAGCTGAAGAAGAAAGCTGCAGTGTAATATCA
TTGATAGTTGGAATTACGGGAAACAGCAAATCTTACTGTGCAGATAAAGGAGCTTCTAAC
ATAACTGATGTTGACATTAAATGTAGTACAATCAGTATGAACGGACCAGGCAGTTTAGCA
CCAAAGACATTAAAGAATGCAATTCACCAGGGCATCATTGCTGCAAAGGTACTAGATGAT
TCATTAGGACAAGCCTTACTGCGTGAACGACGAG
(994 bp)

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