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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c25176_g2_i1
Scaffold_idBomo_Chr1
NCBI non-redundant
(nr)		roquin-1_isoform_X6_[Bombyx_mori]
Ontology
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0010494 C cytoplasmic stress granule
GO:0010608 P posttranscriptional regulation of gene expression
GO:0035613 F RNA stem-loop binding
GO:0042129 P regulation of T cell proliferation
GO:0046872 F metal ion binding
GO:0050863 P regulation of T cell activation
GO:0061014 P positive regulation of mRNA catabolic process
GO:0061158 P 3'-UTR-mediated mRNA destabilization
GO:0071347 P cellular response to interleukin-1
Transcript
Level		FPKM:2.28 TPM:1.19
ORF EntryO_BomoMSG15548_complete:A_BomoMSG_c25176_g2_i1
Sequence
(Nucleotide)
AGGTTGCTGACGGATCATGTTTTGAAGTGGATAGAAGTATAAAGTGTTATTTTTGTGATG
AGTGTACGTGTTATTTATAAGAATGCCAATTCAGGCGCCTCAGTGGACGGACTACCTAAC
CTGTCCGGTGTGCTGCCGAGAGTTCGGTGCTCCGCCCCGGAGTCCTATCAGCCTCAGCTG
CGGCCACACCCTCTGTAGGCACTGTCTGATTCACCTTCATCGGAAACAATGCCCCTTCGA
CCAGACGATCATACAAGTTGAACCCGAGGAGTTGGTTGTGAACACGGCGCTGCTTCAGCT
GGCGGGCTATGCGCCACCTTCGCAGCCGTATCAGCCGCCTTGTATCAAGGCTCTCCCGGA
GTCGGACAGGCAGGCGTACGACACTGTTATACGCACCATGGAGGAACTTGCTGTATTCTT
GAAATGCTCCGGAAACGCCAATATGAGTGGCAACGGGAATCGACTTTCGAGGCCTATGCA
GAGGAAGCTGGTAACGCTGCTGCAGTGTTCGATAACAGACGAGGAAGGTCGGGGCAGGGC
CGCACGGGCAGCCAGGTCTCTTGGTGAACGGACGGTCACTGAACTCATACTTCAACATCA
GAATCCGCAGCAGCTAAGCGCCAACTTATGGGCGGCAGTGAGGGCGCGTGGTTGCCAATT
CCTTGGTCCTGCTATGCAGGAAGAGGTGTTAAAATTGGTACTCCTCGCACTCGAAGACGG
TTCCGCACTCTCCCGAAAGGTACTAGTGATGTTTGTGGTTCAAAGACTGGAGCCGCATTT
TCCGCAGGCCTCAAAAACAAGCATCGGGCATGTAGTGCAGCTTCTGTACCGCGCCTCATG
TTTTAAGGTATCGAAAAGGGAGTCAGATTCGTCGCTCATGCAACTCAAGGAGGAATTCCG
TACGTACGATTCATTGAGGCGCGAACACGACGCTCAGATAGTTCAGATCGCCACCGAATC
AGGTTTGAGAATCGCACCCGATCAGTGGAGTGCTTTGTTGTATGGCGACACCGCGCATAA
GAGTCACATGCAGAGCATCATAGATAAATTACAGACGCCTCAGTCATTTGCCCAATCGGT
CCAAGAGCTGTTTGTCGCGCTGCAACGTACCGGAGACCCGGAACAACTGGTGACAATGAG
CATGCATCTCGATAAACTCGCAAACATCGACGCCAACGCCGATGCTAAAAGCCCAACATG
GAAGCAAATGGCCGATGTGATGACGTCATTAAAGGAGGTTGTGATCGGACTGATCAATTA
CATTCAGCAACAAGCGGCCGGAAAAGACATGAACCAAGGGCAAAAGGATCTACGAAACGA
ACCATCAACTAGTCAATCATCACCGCAAGCCCGTACGACACCGACACCTACCCAGGGGAG
GTACAAGATGGCTATGTGTAAGGATGTTCTGAGATCATTGTGTCCGAGGGGAAATTCATG
CATGTATGCACATTCTGAAGAGGAACTAGAAAGGTATAGACGTTTAACAGGATTGACATG
GTCACAACAAATATATGCATTGGCGGTAGTTTAAACTTTTAATGTGCTATTTCATTGTTT
GAG
(1563 bp)

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