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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c25166_g2_i1
Scaffold_idBomo_Chr4
NCBI non-redundant
(nr)		pre-mRNA-splicing_factor_SYF1_[Helicoverpa_armigera]
Ontology
GO:0000349 P generation of catalytic spliceosome for first transesterification step
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0001824 P blastocyst development
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0006974 P cellular response to DNA damage stimulus
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0021987 P cerebral cortex development
GO:0071010 C prespliceosome
GO:0071012 C catalytic step 1 spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:0071014 C post-mRNA release spliceosomal complex
Transcript
Level		FPKM:9.36 TPM:4.87
ORF EntryO_BomoMSG15525_5prime_partial:A_BomoMSG_c25166_g2_i1
Sequence
(Nucleotide)
CACTGTTTTACCAAGCAGAAAAGTAGCATATCATGATGATTCTGAAACTGTGCAAATGAG
GTTGTATAAATCACTAAAGGTTTGGTCCATGTATGCTGACTTAGAAGAGAGTTTTGGTAC
ATTCAAATCTTGCAAAGCTGTGTATGATCATATTATAGATTTAAAAATTGCTACTCCACA
AATTATTATCAATTATGGATTATTTTTAGAAGAGCATAATTACTTTGAAGAAGCTTTTAG
AGCATATGAAAAGGGTATTGCCTTATTCAAGTGGCCTAATGTGTATGATATTTGGAATAC
ATATCTAACAAAATTTTTAAAAAGATATGGTGGTTCAAAACTTGAAAGAGCAAGAGATTT
ATTTGAGCAATGTCTTGAGCATTGTCCCAATGAATTTGCAAAGTCTATTTTCTTATTATA
TGCAAAATTGGAAGAAGAGCATGGTTTAGCTAGACATGCAATGTCTGTATATGAGAGAGC
TACTACTGCCGTTCTACCTGAAGAAATGTTTGAAATGTTCAATATTTATATTAAAAAAGC
TGCTGAAATTTATGGAGTTCCTAAAACACGACAGATTTATGAAAAGGCTATTGAGACTCT
TCCTGAAGAGAAGGCTAGGGAAATGTGTGTTCGCTTCTCAGAAATGGAAACTCGCCTAGG
TGAAATTGATAGAGCTCGGGCAATATATGCACACTGTAGTCAAATGTGTGATCCTAGAAT
TACAGCTGATTTTTGGAACACTTGGAAAGAATTTGAAGTTAGGCATGGTAATGAAGATAC
AATGAGAGAAATGTTAAGAATTAAAAGAAGTGTGCAAGCCACATATAATACACAGGTGAA
TATGATGTCTGCACAAATGTTGAGTTCTGCAGCACAGGCAGCTGGTACTATATCAGATTT
AGCACCAGGTATGAAAGATGGAATGAGAATGCTTGAAGCCAAAGCAGCTGAAATGGCAGT
ACAGAGTAAAGGCAACATTCTATTTGTGAGAGGAGAAACCCAAGGACTTAAAGAGAGTTC
TGACAAAGTAGTGAATCCTGATGAA
(1045 bp)

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