SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c25065_g1_i2
Scaffold_idBomo_Chr21
NCBI non-redundant
(nr)		pre-mRNA-splicing_factor_RBM22_[Bombyx_mori]
Ontology
GO:0000060 P obsolete protein import into nucleus, translocation
GO:0000166 F nucleotide binding
GO:0000387 P spliceosomal snRNP assembly
GO:0000974 C Prp19 complex
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0017070 F U6 snRNA binding
GO:0033120 P positive regulation of RNA splicing
GO:0035690 P cellular response to xenobiotic stimulus
GO:0036002 F pre-mRNA binding
GO:0044822 F RNA binding
GO:0045292 P mRNA cis splicing, via spliceosome
GO:0046872 F metal ion binding
GO:0048306 F calcium-dependent protein binding
GO:0071006 C U2-type catalytic step 1 spliceosome
GO:0071007 C U2-type catalytic step 2 spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:0090316 P positive regulation of intracellular protein transport
Transcript
Level		FPKM:16.97 TPM:8.83
ORF EntryO_BomoMSG15161_complete:A_BomoMSG_c25065_g1_i2
Sequence
(Nucleotide)
GTTCGTTCAGAGTGAAAATCTGTCATTACAAAATGAATGTTCAATGACGTACCTTGGTAA
CTAAATACTTTTGTGATTTAGTTGCATGTAGAAATGGGAAAGAAGTGTTTTGTTTGATAG
GTTAAGCTGCGTTGAATCTAAAATAATATCAAGAAAGGACACGCCATGGCTACATCGAAG
TCAACAAACACATACAATCGTCAGAATTGGGAAGACGCCGATTTTCCAATATTGTGCCAA
ACATGTCTTGGAGATAACCCTTACATTAGAATGACTAAAGAAAAATACGGTAAAGAATGT
AAAATATGCTCAAGACCTTTCACAGTGTTTCGATGGTGTCCCGGAGCAAGAATGCGTTTC
AAGAAAACAGAAATATGTCAGACCTGTTCGAAACTGAAAAATGTTTGTCAAACATGTTTA
TTGGATTTGGAATATGGTCTGCCAATCCAAGTGAGAGATGCTGCATTAAAAGTTCAGGAT
GACCTACCTCGAAACGAAGTAAACAAGGAATATTACATACAAAACTTGGAGAGTCAGCTG
TCTAACTCTGATCCAACACAGCCAACCAATTCTCTAAAATCTAAAGGATCGTCCGATTTG
TTGGTGCGGTTAGCTAGAACAGCTCCATATTATAAGAGGAATAGACCGCACGTGTGCTCG
TTTTGGGTCAAAGGAGAATGTAGACGAGGGGAAGAATGTCCGTATCGTCACGAGAAGCCA
ACAGATCCTGATGATCCACTAGCTGATCAGAACATTAAAGACAGGTATTATGGTGTAAAT
GATCCAGTAGCTGAGAAGCTTATGCGTCGTGCTGCTGCAATGCCTGCTCTACCTCCACCT
GAAGACAAAACTGTTACTACCTTGTATGTTGGTAATCTTCCTGATAATGTCACTGAGGAC
GAGCTTAGAGGCCACTTTTACCAATATGGTGAAATTAGATGTTTGACTCTTGTACCTCGA
GCCCAGTGTGCCTTTGTGCAATATACTTCAAGAAATGCTGCAGAACATGCTGCAGAAAAG
ACTTTCAATCGTCTTGTTATTTTTGGCAAGAGACTGACAATCAAATGGGGTAAATCGCAA
GGACGACAAGGACTTACTGAGAAGAATGATGGTGTACCCATGTTGGAACCAGTTCCTGGA
TTGCCTGGGACGTTGCCACCACCCCCTGCATATTTACATCCATTCCCGCCACAAATGCCA
CCACCCCCGAACCGTCCGAACGATTTCTTCAACTTGCACCACTATGGTGGTCCGGGCTGG
GGACCGTGGGGTCCGCCTGGCATGGCGCCGCCCCCGCCTCCGGCTCCGCTCCCGGCCCCG
CTCCGCCTGCACTACCCTAGCCAGGACCCCGCGCGTCTCGGGGCCCACGCACACACCAAC
GCGCCGCAAATTTAGCAGTTGCTAATAGAATTCATAGTCATGAACTTTAAATTATGACGA
TGCTTGTTAAACGTGAATAAATCCAATAACTATGATTTGTGCATTGTTTGTTTGTGGTAT
TCTTTGTGTGAAATTTGAAAAATAAATTTAAGTAAGGTTCGATATAGAGTAGCCATTCCC
AAAACGACCCAGTACCTTCAAGCTTAATACCTATAGAATAGTAAAATAAAGAATAAAAAA
ACGGAATTGAAGATGGTGGTGTGATCTAAATGAATTATTTTTAAATAAACGAGCACTGCT
AAAGAAGATGGAAAGACGCCGTAACAATTTGCTAGTACTAGAG
(1723 bp)

- SilkBase 1999-2023 -