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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMSG_c25052_g1_i2
Scaffold_idBomo_Chr10
NCBI non-redundant
(nr)		splicing_factor_3B_subunit_1_[Bombyx_mori]
Ontology
GO:0000245 P spliceosomal complex assembly
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000398 P mRNA splicing, via spliceosome
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005686 C U2 snRNP
GO:0005689 C U12-type spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0034693 C U11/U12 snRNP
GO:0044822 F RNA binding
GO:0045815 P epigenetic maintenance of chromatin in transcription-competent conformation
GO:0071004 C U2-type prespliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:0.03 TPM:0.02
ORF EntryO_BomoMSG15118_complete:A_BomoMSG_c25052_g1_i2
Sequence
(Nucleotide)
GTGCTCTTCCGATCTCGGATATGTGACATCAATTGCTGCTAATGACGAAGTAGAAGATGA
TGACCTCGAAAATGTTCCTATAACTCAGAAAAGGCCAGGATATACAGCACCTGCTTCACT
GTTGAATGACATTGCACAAAGTGATAAAGAATTCGATCCTTTTGCTGACAAACGAAGACC
AACTATCGCTGATAGAGAGGATGAATATCGACAAAAGAGGCGCAGGATGATTATATCACC
TGAAAGAAATGATCCTTTTGCAGAAGGTGGGAAAACTCCTGATGTCGGATCGAGGACATA
CACTGATATAATGAAAGAGCAGTATCTTCTTGCTGAAGAAACAGAACTCAGAAAGAAACT
GTTAGAGAAAGCTAGGGAAGGAACTCTCAAACCAGTACCACAATCTAATGGAGAATCCAT
AAAACCAGCAGCAAAACGCAAAGGTAGATGGGATCAAAGTTCTGAAGAAACACCAGTTGT
TAAGAAAACAGTATCAACTACACCAAGCTCACAGACAACTCCGTCTTGGGATGCTGAGAG
AGGCACATGGGAAGAAACTCCGGGAGCAGGTCGGGGCGGCGAGACGCCCGGTGCCACGCC
ATCGGCACGTGTTTGGGATGCCACACCAGGACATATCACTCCTGGACACGCCACTCCGGG
GCGCGAAACTCCGGCTCATCACGCTTCTCGCAGAAATCGCTGGGATGAAACACCAAAAAC
AGATAGAGAAACACCAGGACACAACAGCGGTTGGGCTGAGACACCACGAACAGATCGCGG
GTCAGGCGTGGATACAATACAGGAGACCCCCACCCCTGGCACAAAGCGGCGCTCGCGTTG
GGACGAAACCCCCGGTGCCACGCCCGCACCCGCCACCCCCACGCCTTCTCACGCCACGCC
TTCCCATGCCACACCCTCGCACGCCACGCCATCGCTCTCTACACCGACGCCGCACACGCC
TGTCTTCACGCCAGGAGGGTCTACACCTGTGGGAGTGAAAGCCATGGCACTGGCTACACC
AACACCTGGTCATGTTGCAGCCATGACTCCAGAACAGTTACAAGCTTATCGTTGGGAGAA
AGAAATAGACGAGCGTAATAGACCTTACACTGATGAAGAACTGGATGCCATGTTCCCTCC
TGGGTACAAGGTTTTACCACCGCCTGCCGGGTACGTCCCGATTCGGACGCCGGCCCGCAA
GCTGACGGCGACGCCCACGCCGTTGGGTGGTACTCCAATCGGGTTTTTCATGCAGACGGA
GGAGCCGGGCGGCTCGGCCGCGGCGGCCGCGCGTCTTCTCGACCCTCAGCCCAAGGGTAA
CCAGCAGCTGCCCTTTATGAAGCCCGAGGACGCCCAGTACTTCGACAAACTTCTCATCGA
CGTCGACGAGGATACACTCTCTCCCGACGAACTTAAGGAACGGAAAATAATGAAGCTTCT
TTTGAAAATAAAGAACGGTACGCCACCCATGTGCAAAGCTGCCTTACGACAAATAACAGA
TAAAGCTCGCGAATTCGGTGCTGGACCACTTTTCAATCAAATTCTGCCATTACTGATGAG
TCCTACGCTGGAAGATCAAGAGAGACATCTACTGGTCAAAGTCATAGACAGGATTTTGTA
TAAATTAGACGACTTGGTTCGACCCTACGTACATAAGATTCTTGTCGTCATTGAACCTCT
GCTTATTGATGAAGATTATTATGCGCGTGTCGAAGGTCGCGAGATCATTTCAAATTTAGC
TAAAGCAGCCGGCTTGGCTACTATGATTTCTACAATGAGGCCTGATATAGACAACATAGA
TGAGTATGTACGAAACACAACCGCTCGAGCGTTTGCGGTAGTGGCATCGGCCTTGGGTAT
TCCATCTTTATTGCCATTTTTAAAAGCTGTGTGCAGATCTAAGAAATCCTGGCAAGCACG
TCACACAGGAATAAAGATTGTGCAACAAATTGCTATTCTGATGGGCTGTGCTATTCTGCC
ACATTTGAAATCTCTTGTTGAAATTATTGAACATGGTCTGGTGGACGAACAACAGAAGGT
CCGAACGATCACGGCGCTGGCGAGCGCGGCTCTGGCCGAGGCCGCCACGCCCTACGGTAT
CGAGTCCTTCGATTCCGTGCTCAAACCTCTGTGGAAAGGTATTCGTACGCATCGTGGTAA
AGGTCTGGCTGCATTCCTGAAAGCCATCGGATACCTCATCCCTCTCATGGATGCAGAATA
CGCGAATTACTACACACGAGAAGTGATGCTAATTCTTATTCGTGAGTTCCAGTCGCCCGA
TGAAGAAATGAAAAAAATCGTCTTAAAAGTAGTAAAACAATGTTGCGGTACCGACGGTGT
TGAGCCTCAATACATAATGGATGAAATATTGCCTCATTTCTTTAAACACTTCTGGAACCA
TCGTATGGCCCTCGACAGACGAAACTATCGCCAGCTTGTCGACACCACAGTGGAAATTGC
AAACAAGGTCGGTGCATCAGAAATTATCAACAGAATTGTTGATGATCTAAAAGACGACAA
TGAGCAGTATAGAAAAATGGTGATGGAGTCCATTGAAAAGATTCTCGCTAATTTAGGAGC
AGCAGACATTGATTCTAAGCTCGAAGAAGCTCTTATCGATGGAATATTGTATGCATTCCA
AGAACAGACAACTGAGGATGTTGTGATGCTGAACGGTTTTGGAACAATCGTGAATCAATT
GGGAAAACGCGTAAAGCCCTATTTACCACAGATATGTGGTATTATTCTTTGGCGTATGAA
CAACAAGTCTGCTAAAGTTCGGCAACAAGCTGCCGATCTCATTTCTCGGATCGCTGTCGT
GATGAAAACTTGTCAGGAGGAAAAGTTAATGGGGCATCTTGGTGTTGTACTGTATGAGTA
CTTGGGAGAGGAATATCCTGAAGTGCTAGGCTCTATACTTGGTGCATTAAAAGCAATTGT
CAATGTTATTGGAATGACAAAGATGACCCCACCAATAAAGGATCTCCTGCCTAGGCTTAC
ACCCATTTTGAAAAACAGGCATGAAAAAGTACAAGAGAATTGTATTGATTTAGTGGGTCG
TATTGCAGACAGAGGACCGGAATTTGTGTCGGCCAGAGAATGGATGAGAATATGTTTTGA
ATTGCTTGAACTATTAAAGGCTCATAAGAAGGCAATTAGACGAGCGACTGTAAATACCTT
TGGTTATATTGCTAAAGCCATCGGTCCTCATGACGTACTCGCAACCTTACTTAACAATCT
GAAAGTGCAAGAGAGACAGAACAGAGTGTGCACAACGGTCGCTATTGCTATAGTTGCAGA
GACCTGTTCACCTTTCACAGTGCTACCTGCTTTAATGAATGAATACAGAGTACCGGAATT
AAATGTTCAAAACGGTGTGCTCAAATCACTATCTTTCCTTTTCGAGTACATTGGAGAAAT
GGGCAAGGATTACATTTATGCAGTTTGCCCATTATTGGAAGACGCGCTTATGGATCGAGA
TTTAGTACACAGACAAACGGCTTGCGCTGCCATAAAACATATGTCGCTCGGCGTGTATGG
TTTCGGCTGTGAAGATGCCTTAGTACATCTATTAAATCATGTTTGGCCAAATATTTTTGA
GACATCACCGCATCTGGTGCAAGCCTTCATGGACGCTGTTGAGGGCATGCGAGTTGCCCT
AGGTCCCATTAAAATACTTCAATATGCATTACAGGGCCTGTTCCATCCAGCGAGGAAAGT
ACGCGACGTTTATTGGAAAATTTACAATACGCTTTACATCGGAGGACAGGACGCACTTGT
TGCAGGATATCCCAGAATA
(3799 bp)

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